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AT3G47640.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
nucleus 1.000
ASURE: nucleus
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : basic helix-loop-helix (bHLH) DNA-binding superfamily protein
Curator
Summary (TAIR10)
Encodes POPEYE (PYE), a bHLH transcription factor regulating response to iron deficiency in Arabidopsis roots.
Computational
Description (TAIR10)
POPEYE (PYE); FUNCTIONS IN: DNA binding, sequence-specific DNA binding transcription factor activity; INVOLVED IN: cellular response to iron ion starvation, iron ion homeostasis, regulation of transcription; LOCATED IN: nucleus, chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Helix-loop-helix DNA-binding domain (InterPro:IPR001092), Helix-loop-helix DNA-binding (InterPro:IPR011598); BEST Arabidopsis thaliana protein match is: basic helix-loop-helix (bHLH) DNA-binding superfamily protein (TAIR:AT4G36060.1); Has 345 Blast hits to 345 proteins in 44 species: Archae - 0; Bacteria - 0; Metazoa - 15; Fungi - 0; Plants - 321; Viruses - 0; Other Eukaryotes - 9 (source: NCBI BLink).
Protein Annotations
BioGrid:9238eggNOG:ENOG410J050eggNOG:ENOG410YN73EMBL:AF488582EMBL:AL132955EMBL:AY080786EMBL:AY114018
EMBL:CP002686EnsemblPlants:AT3G47640EnsemblPlants:AT3G47640.1EnsemblPlants:AT3G47640.2EnsemblPlants:AT3G47640.3entrez:823918Gene3D:4.10.280.10
GeneID:823918Genevisible:Q9SN74GO:GO:0003677GO:GO:0003700GO:GO:0005634GO:GO:0006351GO:GO:0006355
GO:GO:0010106GO:GO:0055072Gramene:AT3G47640.1Gramene:AT3G47640.2Gramene:AT3G47640.3hmmpanther:PTHR23042hmmpanther:PTHR23042:SF51
HOGENOM:HOG000070871InParanoid:Q9SN74IntAct:Q9SN74InterPro:IPR011598KEGG:ath:AT3G47640ncoils:CoilOMA:ILCEATR
PaxDb:Q9SN74Pfam:Q9SN74Pfscan:PS50888PhylomeDB:Q9SN74PIR:T45724PRIDE:Q9SN74PRO:PR:Q9SN74
PROSITE:PS50888ProteinModelPortal:Q9SN74Proteomes:UP000006548RefSeq:NP_001190029.1RefSeq:NP_001190030.1RefSeq:NP_190348.1STRING:3702.AT3G47640.1
SUPFAM:SSF47459TAIR:AT3G47640tair10-symbols:PYEUniGene:At.43911UniProt:Q9SN74
Coordinates (TAIR10) chr3:+:17568035..17569101
Molecular Weight (calculated) 26945.60 Da
IEP (calculated) 6.52
GRAVY (calculated) -0.79
Length 240 amino acids
Sequence (TAIR10)
(BLAST)
001: MVSKTPSTSS DEANATADER CRKGKVPKRI NKAVRERLKR EHLNELFIEL ADTLELNQQN SGKASILCEA TRFLKDVFGQ IESLRKEHAS LLSESSYVTT
101: EKNELKEETS VLETEISKLQ NEIEARANQS KPDLNTSPAP EYHHHHYQQQ HPERVSQFPG LPIFQGPGFQ QSATTLHPPA TVLVLPIQPD PQTQDISEMT
201: QAQQPLMFNS SNVSKPCPRY ASAADSWSSR LLGERLKASE
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)