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AT3G17690.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
plastid 1.000
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : cyclic nucleotide gated channel 19
Curator
Summary (TAIR10)
member of Cyclic nucleotide gated channel family
Computational
Description (TAIR10)
cyclic nucleotide gated channel 19 (CNGC19); FUNCTIONS IN: ion channel activity, cyclic nucleotide binding, calmodulin binding; INVOLVED IN: ion transport, transmembrane transport; LOCATED IN: membrane; EXPRESSED IN: hypocotyl, root; CONTAINS InterPro DOMAIN/s: Cyclic nucleotide-binding (InterPro:IPR000595), Ion transport (InterPro:IPR005821), Cyclic nucleotide-binding-like (InterPro:IPR018490), RmlC-like jelly roll fold (InterPro:IPR014710); BEST Arabidopsis thaliana protein match is: cyclic nucleotide-binding transporter 1 (TAIR:AT3G17700.1); Has 2826 Blast hits to 2760 proteins in 210 species: Archae - 0; Bacteria - 14; Metazoa - 1491; Fungi - 0; Plants - 890; Viruses - 0; Other Eukaryotes - 431 (source: NCBI BLink).
Protein Annotations
BioGrid:6369eggNOG:ENOG410XPSEeggNOG:KOG0498EMBL:AB022219EMBL:AF148542EMBL:CP002686EnsemblPlants:AT3G17690
EnsemblPlants:AT3G17690.1entrez:821036Gene3D:2.60.120.10GeneID:821036Genevisible:Q9LDR2GO:GO:0005249GO:GO:0005886
GO:GO:0016021GO:GO:0030552GO:GO:0030553GO:GO:0042391GO:GO:0071805Gramene:AT3G17690.1hmmpanther:PTHR10217
hmmpanther:PTHR10217:SF475HOGENOM:HOG000238338InParanoid:Q9LDR2InterPro:IPR000595InterPro:IPR005821InterPro:IPR014710InterPro:IPR018490
KEGG:ath:AT3G17690KO:K05391OMA:LNAWNISPaxDb:Q9LDR2Pfam:PF00520Pfam:Q9LDR2Pfscan:PS50042
PhylomeDB:Q9LDR2PRIDE:Q9LDR2PRO:PR:Q9LDR2PROSITE:PS50042ProteinModelPortal:Q9LDR2Proteomes:UP000006548Reactome:R-ATH-2485179
Reactome:R-ATH-2514859Reactome:R-ATH-5620916RefSeq:NP_188396.2SMART:SM00100SMR:Q9LDR2STRING:3702.AT3G17690.1SUPFAM:SSF51206
SUPFAM:SSF81324TAIR:AT3G17690tair10-symbols:ATCNGC19tair10-symbols:CNGC19TCDB:1.A.1.5.23TMHMM:TMhelixUniGene:At.47913
UniProt:Q9LDR2
Coordinates (TAIR10) chr3:+:6045382..6048339
Molecular Weight (calculated) 84053.90 Da
IEP (calculated) 10.37
GRAVY (calculated) -0.17
Length 729 amino acids
Sequence (TAIR10)
(BLAST)
001: MAHTRTFTSR NRSVSLSNPS FSIDGFDNST VTLGYTGPLR TQRIRPPLVQ MSGPIHSTRR TEPLFSPSPQ ESPDSSSTVD VPPEDDFVFK NANLLRSGQL
101: GMCNDPYCTT CPSYYNRQAA QLHTSRVSAS RFRTVLYGDA RGWAKRFASS VRRCLPGIMN PHSKFVQVWT RVLAFSSLVA IFIDPLFFFL LLIQQDNKCI
201: AIDWRATKVL VSLRSITDLI FFINILLQFR LAYVAPESRI VGAGQLVDHP RKIARHYFRG KFLLDMFIVF PIPQIMILRI IPLHLGTRRE ESEKQILRAT
301: VLFQYIPKLY RLLPLLAGQT STGFIFESAW ANFVINLLTF MLAGHAVGSC WYLSALQRVK KCMLNAWNIS ADERRNLIDC ARGSYASKSQ RDLWRDNASV
401: NACFQENGYT YGIYLKAVNL TNESSFFTRF SYSLYWGFQQ ISTLAGNLSP SYSVGEVFFT MGIIGLGLLL FARLIGNMHN FLQSLDRRRM EMMLRKRDVE
501: QWMSHRRLPE DIRKRVREVE RYTWAATRGV NEELLFENMP DDLQRDIRRH LFKFLKKVRI FSLMDESVLD SIRERLKQRT YIRSSTVLHH RGLVEKMVFI
601: VRGEMESIGE DGSVLPLSEG DVCGEELLTW CLSSINPDGT RIKMPPKGLV SNRNVRCVTN VEAFSLSVAD LEDVTSLFSR FLRSHRVQGA IRYESPYWRL
701: RAAMQIQVAW RYRKRQLQRL NTAHSNSNR
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)