AT5G64870.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:vacuole 0.473 golgi 0.325 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : SPFH/Band 7/PHB domain-containing membrane-associated protein family | ||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
SPFH/Band 7/PHB domain-containing membrane-associated protein family; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane, vacuole; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: Band 7 protein (InterPro:IPR001107); BEST Arabidopsis thaliana protein match is: SPFH/Band 7/PHB domain-containing membrane-associated protein family (TAIR:AT5G25250.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr5:-:25929776..25931308 | ||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 52836.40 Da | ||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 7.29 | ||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.33 | ||||||||||||||||||||||||||||||||||||||||||||
| Length | 479 amino acids | ||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MSYRVAKASQ YLAITGGGIT DIKLAKKSWV FPWQSCTVFD VSPVNYTFEV QAMSSEKLPF VIPAVFTIGP RVDDPHALLL YAMLMSQHDK HSNHVNELVQ 101: GVIEGETRVL VASMTMEEVF KGTKEFKKEV FDKVQLELNQ FGLVIYNANV KQLVDVPGHE YFSYLGQKTQ MEAANQAKID VAEAKMKGEV GAKERTGLTI 201: QNAAKIDAES KIISTQRLGE GTKEEIKVKT EVKVFQNEKE ALVAKADAAL AIQKAALSQN SRVAEVEAAK AVALREAELQ TKVEKMNALT RTEKLKAEFL 301: SKASVEYETK VQEANWELYN KQKQAEAVLY EKQKQAEATK AAADAAFYSK QKDAEGLVAM ADAQGTYLKT LLGAVNNDYS AMRDFLMINN GIYQDIAKTN 401: AVAIRDLQPK ISVWNHGGAE QGMNGGGKAT MNDIAGLYKM LPPVLDTVYE QTGMQPPAWI GTLRGAEPKQ SLHAQQHRG |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)