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AT4G30430.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
plasma membrane 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : tetraspanin9
Curator
Summary (TAIR10)
Member of TETRASPANIN family
Computational
Description (TAIR10)
tetraspanin9 (TET9); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: aging; LOCATED IN: plasma membrane; EXPRESSED IN: 10 plant structures; EXPRESSED DURING: 4 anthesis, LP.10 ten leaves visible, C globular stage, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Tetraspanin (InterPro:IPR018499), Tetraspanin, subgroup (InterPro:IPR000301); BEST Arabidopsis thaliana protein match is: tetraspanin8 (TAIR:AT2G23810.1); Has 465 Blast hits to 462 proteins in 38 species: Archae - 0; Bacteria - 0; Metazoa - 35; Fungi - 0; Plants - 430; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410JX5ReggNOG:ENOG411049XEMBL:AL161577EMBL:AY084949
EMBL:CP002687EnsemblPlants:AT4G30430EnsemblPlants:AT4G30430.1entrez:829166
GeneID:829166Genevisible:Q9M0B7GO:GO:0005886GO:GO:0016021
Gramene:AT4G30430.1hmmpanther:PTHR32191hmmpanther:PTHR32191:SF2HOGENOM:HOG000238911
InParanoid:Q9M0B7InterPro:IPR000301InterPro:IPR018499KEGG:ath:AT4G30430
PaxDb:Q9M0B7Pfam:PF00335Pfam:Q9M0B7PhylomeDB:Q9M0B7
PIR:H85355PRIDE:Q9M0B7PRINTS:PR00259PRO:PR:Q9M0B7
Proteomes:UP000006548RefSeq:NP_194772.1STRING:3702.AT4G30430.1TAIR:AT4G30430
tair10-symbols:TET9TMHMM:TMhelixUniGene:At.31835UniProt:Q9M0B7
Coordinates (TAIR10) chr4:-:14879029..14880272
Molecular Weight (calculated) 31065.80 Da
IEP (calculated) 8.57
GRAVY (calculated) 0.22
Length 272 amino acids
Sequence (TAIR10)
(BLAST)
001: MVRFSNSLVG ILNFFVFLLS VPILSTGIWL SLKATTQCER FLDKPMIALG VFLMIIAIAG VVGSCCRVTW LLWSYLFVMF FLILIVLCFT IFAFVVTSKG
101: SGETIQGKAY KEYRLEAYSD WLQRRVNNAK HWNSIRSCLY ESKFCYNLEL VTANHTVSDF YKEDLTAFES GCCKPSNDCD FTYITSTTWN KTSGTHKNSD
201: CQLWDNEKHK LCYNCKACKA GFLDNLKAAW KRVAIVNIIF LVLLVVVYAM GCCAFRNNKE DRYGRSNGFN NS
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)