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AT2G45820.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
plasma membrane 1.000
ASURE: plasma membrane
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:26781341 (2016): plasma membrane
  • PMID:25900983 (2015): Golgi
  • PMID:25900983 (2015): Golgi Golgi apparatus Golgi membrane
  • PMID:25900983 (2015): Golgi trans-Golgi network
  • PMID:25900983 (2015): Golgi trans-Golgi network multivesicular body
  • PMID:25641898 (2015): plasma membrane
  • PMID:22923678 (2012): plasma membrane
  • PMID:22318864 (2012): plasma membrane
  • PMID:22215637 (2012): plasma membrane
  • PMID:20843791 (2010): plasma membrane
  • PMID:20374526 (2010): plasma membrane
  • PMID:19334764 (2009): plasma membrane
  • PMID:18686298 (2008): plant-type vacuole plant-type vacuole membrane
  • PMID:17644812 (2007): plasma membrane
  • PMID:17317660 (2007): plasma membrane
  • PMID:16635983 (2006): plasma membrane
  • PMID:15574830 (2004): plasma membrane
  • PMID:15308754 (2004): plasma membrane
  • PMID:15060130 (2004): plasma membrane
  • PMID:14506206 (2003): plasma membrane
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : Remorin family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Remorin family protein; FUNCTIONS IN: DNA binding; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Remorin, C-terminal (InterPro:IPR005516), Remorin, N-terminal (InterPro:IPR005518); BEST Arabidopsis thaliana protein match is: Remorin family protein (TAIR:AT3G61260.1); Has 2543 Blast hits to 1840 proteins in 340 species: Archae - 2; Bacteria - 408; Metazoa - 392; Fungi - 191; Plants - 500; Viruses - 4; Other Eukaryotes - 1046 (source: NCBI BLink).
Protein Annotations
BioGrid:4526eggNOG:ENOG410IX7MeggNOG:ENOG410YI71EMBL:AC004665EMBL:AY045996EMBL:AY079329EMBL:CP002685
EMBL:M25268EnsemblPlants:AT2G45820EnsemblPlants:AT2G45820.1entrez:819190GeneID:819190Genevisible:O80837GO:GO:0005886
Gramene:AT2G45820.1hmmpanther:PTHR31775HOGENOM:HOG000239299InParanoid:O80837IntAct:O80837InterPro:IPR005516InterPro:IPR005518
iPTMnet:O80837KEGG:ath:AT2G45820ncoils:CoilOMA:TSFIKAWPaxDb:O80837Pfam:O80837Pfam:PF03763
Pfam:PF03766PhylomeDB:O80837PIR:T02465PRIDE:O80837PRO:PR:O80837ProteinModelPortal:O80837Proteomes:UP000006548
RefSeq:NP_182106.1STRING:3702.AT2G45820.1SwissPalm:O80837TAIR:AT2G45820UniGene:At.24530UniProt:O80837
Coordinates (TAIR10) chr2:-:18863147..18864576
Molecular Weight (calculated) 20969.10 Da
IEP (calculated) 9.04
GRAVY (calculated) -0.81
Length 190 amino acids
Sequence (TAIR10)
(BLAST)
001: MAEEQKTSKV DVESPAVLAP AKEPTPAPVE VADEKIHNPP PVESKALAVV EKPIEEHTPK KASSGSADRD VILADLEKEK KTSFIKAWEE SEKSKAENRA
101: QKKISDVHAW ENSKKAAVEA QLRKIEEKLE KKKAQYGEKM KNKVAAIHKL AEEKRAMVEA KKGEELLKAE EMGAKYRATG VVPKATCGCF
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)