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AT4G18070.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 0.974
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:28865150 (2017): extracellular region plant-type cell wall
  • PMID:26572690 (2016): extracellular region plant-type cell wall
  • PMID:19334764 (2009): plasma membrane
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding :
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G29530.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410JUP2eggNOG:ENOG41106PREMBL:AK227973EMBL:AK316944
EMBL:AY063879EMBL:BT004610EMBL:CP002687EnsemblPlants:AT4G18070
EnsemblPlants:AT4G18070.1EnsemblPlants:AT4G18070.3EnsemblPlants:AT4G18070.4entrez:827532
ExpressionAtlas:Q8VZS7GeneID:827532Gramene:AT4G18070.1Gramene:AT4G18070.3
Gramene:AT4G18070.4hmmpanther:PTHR37187hmmpanther:PTHR37187:SF1HOGENOM:HOG000131675
KEGG:ath:AT4G18070OMA:ENTGLMDPhylomeDB:Q8VZS7Proteomes:UP000006548
RefSeq:NP_001031659.2RefSeq:NP_001031660.2RefSeq:NP_849405.2STRING:3702.AT4G18070.1
TAIR:AT4G18070UniGene:At.27158UniProt:Q8VZS7
Coordinates (TAIR10) chr4:+:10030839..10032329
Molecular Weight (calculated) 27779.30 Da
IEP (calculated) 4.21
GRAVY (calculated) -0.72
Length 262 amino acids
Sequence (TAIR10)
(BLAST)
001: MPSGAKKRKA AKKKQEEEQQ QQGSSTLINL KSNNHDSRSQ GDKESDDGVN ERIEITDSSH DHDKSSSSSS SSSSSSSSSS SDDESREVKK IDDDKKTGDD
101: VSEVITVSSV PIQPVPIAAD APFMGFTANA IVENTGLMDS AVPNDPESGE LVEISHVDTI VSNEADDNSL PKATEIAAEV ALAFDEIRQT SSGATDSDVK
201: ENEGKTSPLP ESNGVPEGNI ESNVVISHEE EAPILIPTHG IAKRTSWFSC CGLFDVVTGS SR
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)