suba logo
AT3G44620.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

.
SUBAcon:
plastid 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:31186290 (2019): cytosol None
  • PMID:28865150 (2017): extracellular region plant-type cell wall
  • PMID:24361574 (2014): plastid plastid stroma
  • PMID:24124904 (2013): plastid
  • PMID:23673981 (2013): plastid plastid stroma plastoglobules
  • PMID:20423899 (2010): plastid
  • PMID:18633119 (2008): plastid plastid stroma
  • PMID:18431481 (2008): plastid plastid stroma
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : protein tyrosine phosphatases;protein tyrosine phosphatases
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
protein tyrosine phosphatases;protein tyrosine phosphatases; FUNCTIONS IN: protein tyrosine phosphatase activity; INVOLVED IN: protein amino acid dephosphorylation; LOCATED IN: chloroplast stroma, chloroplast; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Protein-tyrosine phosphatase/arsenate reductase (InterPro:IPR000106), Protein-tyrosine phosphatase, low molecular weight (InterPro:IPR017867); Has 5215 Blast hits to 5214 proteins in 1894 species: Archae - 4; Bacteria - 4223; Metazoa - 305; Fungi - 139; Plants - 47; Viruses - 0; Other Eukaryotes - 497 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:AT3G44620-MONOMERBioCyc:ARA:GQT-2013-MONOMEREMBL:AK175171EMBL:AK176521
EMBL:CP002686EnsemblPlants:AT3G44620EnsemblPlants:AT3G44620.1entrez:823588
ExpressionAtlas:Q67YE7GeneID:823588GO:GO:0004725Gramene:AT3G44620.1
hmmpanther:PTHR11717hmmpanther:PTHR11717:SF7HOGENOM:HOG000273094InterPro:IPR017867
InterPro:IPR023485PANTHER:PTHR11717:SF7Pfam:PF01451PhylomeDB:Q67YE7
PRINTS:PR00719Proteomes:UP000006548RefSeq:NP_190048.2SMART:SM00226
SMR:Q67YE7SUPFAM:SSF52788TAIR:AT3G44620UniGene:At.19778
UniProt:Q67YE7
Coordinates (TAIR10) chr3:+:16193858..16195422
Molecular Weight (calculated) 26951.30 Da
IEP (calculated) 8.88
GRAVY (calculated) -0.43
Length 239 amino acids
Sequence (TAIR10)
(BLAST)
001: MMMYCPNLTA SLTIPSYLPF CHYTRQFRPS HFRSSDKNPN LVSIIRAKPR ISHSLRCFVS SSMATPPPTQ SSETKPYSVL FVCLGNICRS PAAEGVFRDI
101: VKKRGLDSKF NIDSAGTIDY HEGNMADPRM RSAAKRRGIE ITSLSRPIKA SDFREFDLIL AMDDQNKEDI LKAYNVWKAR GNFPPDADKK VKLMCSYCKK
201: HNDKFVPDPY YGGAQGFEKV LDLLEDACES LLDSITAQS
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)