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AT1G53450.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
cytosol 0.986
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding :
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G14830.2); Has 71 Blast hits to 71 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 71; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Protein Annotations
DNASU:841780eggNOG:ENOG410IETZeggNOG:ENOG410YAB2EMBL:CP002684EnsemblPlants:AT1G53450EnsemblPlants:AT1G53450.1EnsemblPlants:AT1G53450.2
entrez:841780GeneID:841780Gramene:AT1G53450.1Gramene:AT1G53450.2hmmpanther:PTHR34541hmmpanther:PTHR34541:SF2KEGG:ath:AT1G53450
OMA:FVSTERDProteomes:UP000006548RefSeq:NP_564631.2RefSeq:NP_974017.1TAIR:AT1G53450UniGene:At.28767UniGene:At.66887
UniProt:F4HRH6
Coordinates (TAIR10) chr1:-:19951747..19953839
Molecular Weight (calculated) 50344.10 Da
IEP (calculated) 8.74
GRAVY (calculated) -0.22
Length 453 amino acids
Sequence (TAIR10)
(BLAST)
001: MSVERSLEAW EEVQRHGQDL ADRLAQGFNG LIQINPPSFP SKLFDLEFSS QHFGIRDSRF SIHQPINGVS AILDIGNKIG QAGVDFGSGL NVMVQQFFRR
101: LPVPFRHDEN VFVSTERDTV TRSHRAYVDT KENSAFSKTD TASSGTVYEE KVTEFDLRTI GLHRRAKGTV ELSSSYETRT SSMEHSLAAR GDLWRVEAST
201: SNSPVRDDSS SLFLLQLGPL LFLRDSTLLL PVHLSKQHLL WYGYDRKKGM HSLCPALWSK HRRWLMMSML CLNPLDCSFV DLQFPNGQLT YVSGEGLTTS
301: VFVPLCGGLL QAQGQYPGDM RFSFSCKSKQ GTRITPMINW PDKSLALGVS QALAWRRSGV MLKPAIQLSV CSTFGGSNPG IKTEVIQSLN DNINMICGCA
401: FTAHPSTFAS VSFGRSKWNG NIGRTGIVVR ADTPLPNVAR PSFSIQINNA FEF
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)