AT1G28560.2
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 0.976 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : snRNA activating complex family protein | ||||||||
| Curator Summary (TAIR10) |
Encodes a protein similar to human SNAP50. Mutants display different temperature sensitivities in the dedifferentiation of cells from different organs. Mutation inhibits the dedifferentiation-associated accumulation of U-snRNAs and some other small RNA species encoded by independent-type genes carrying the USE and TATA box. Required for the elevation of cell proliferation competence in hypocotyl dedifferentiation. | ||||||||
| Computational Description (TAIR10) |
SHOOT REDIFFERENTIATION DEFECTIVE 2 (SRD2); FUNCTIONS IN: DNA binding; INVOLVED IN: snRNA transcription, organ morphogenesis; LOCATED IN: nucleus; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: snRNA-activating protein complex, subunit 3, C-terminal (InterPro:IPR022042); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). | ||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr1:-:10038197..10040382 | ||||||||
| Molecular Weight (calculated) | 44796.60 Da | ||||||||
| IEP (calculated) | 7.85 | ||||||||
| GRAVY (calculated) | -0.62 | ||||||||
| Length | 386 amino acids | ||||||||
| Sequence (TAIR10) (BLAST) |
001: MAMKEAFPED YLSQEELEPS LNVSHHRASS QYISKVFENP LAGRAKRKRT VKNTEVKKRT LKNTEVMKMT EKKTEEAYLV KVEQLAKLKQ KQEEDKAAVT 101: LHCFSKTSET GKDVVAPPEG FEQMQSLRFI DNNYTKLKPS DIQGQVDPLF PEVILCVEIY NSRKVKTQEF LVLGRQMLTE LKDNIHCATD QVMQKAGKYD 201: PSGYFLIEDV FHNDLRNPSA KDYSYPILDW LWNSKDEALK KWECVLTGEL QKKQKLVLGE AKSVDLPRYR TADMQSTHFC DIRFRVGASY VYCHQGDCKH 301: TIVIRDMRMS HPEDVQNRAA YPIMFWPKRR IQKCGVCKIK RASKVAVDDK WASENSSYFC DVCFELLHSE EGPLNCDFPV FDYVHE |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)