AT5G42670.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:mitochondrion 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Agenet domain-containing protein | ||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Agenet domain-containing protein; FUNCTIONS IN: RNA binding; INVOLVED IN: biological_process unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Tudor-like, plant (InterPro:IPR014002), Agenet (InterPro:IPR008395); BEST Arabidopsis thaliana protein match is: Agenet domain-containing protein (TAIR:AT5G52070.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). | ||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr5:+:17108262..17110235 | ||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 34074.10 Da | ||||||||||||||||||||||||||||
| IEP (calculated) | 4.46 | ||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.65 | ||||||||||||||||||||||||||||
| Length | 294 amino acids | ||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MKLRLQFCFA LNRIHAAVHS FDKKMSEMNL PFEVGQTVEL KSFELGFRGA WFRCKKRKAL FFDVEYIDYP GEGIHSTKVF QQLEGGNEKC LMIRPVYPPQ 101: CRENEVDGGL EEALVVHGSW KVGDLVDWWE AYCYWSGTVL EVKENESVQI ELLAPPYGEG SSYEAQSKDL RPSLEWSLED GWTVPFSKDG EKRQCAKLMK 201: QLNEDQVSEA ESMEEEKQRG AEPKEEEKQR PTEKLKSDEA LQLNIMDSES IEAAVLDLEE MIVRFEWLKD ILTPDSSEKN SWIYEDYHPS SSRM |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)