suba logo
AT5G10070.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

.
SUBAcon:
nucleus 0.999
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:28865150 (2017): extracellular region plant-type cell wall
  • PMID:18433157 (2008): cytosol
  • PMID:18433157 (2008): nucleus
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : RNase L inhibitor protein-related
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
RNase L inhibitor protein-related; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cytosol, nucleus; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF367 (InterPro:IPR007177), RNase L inhibitor RLI, possible metal-binding domain (InterPro:IPR007209); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Protein Annotations
eggNOG:COG2042eggNOG:KOG3154EMBL:AK227674EMBL:AL356332
EMBL:BT003096EMBL:CP002688EnsemblPlants:AT5G10070EnsemblPlants:AT5G10070.1
entrez:830871ExpressionAtlas:Q9LX21GeneID:830871GO:GO:0006364
Gramene:AT5G10070.1HAMAP:MF_01116hmmpanther:PTHR20426hmmpanther:PTHR20426:SF0
HOGENOM:HOG000227039InterPro:IPR007177InterPro:IPR007209InterPro:IPR022968
KEGG:ath:AT5G10070KO:K09140PANTHER:PTHR20426Pfam:PF04034
Pfam:PF04068PhylomeDB:Q9LX21PIR:T50011ProDom:PD016638
Proteomes:UP000006548RefSeq:NP_196569.1STRING:3702.AT5G10070.2TAIR:AT5G10070
UniGene:At.1622UniProt:Q9LX21
Coordinates (TAIR10) chr5:-:3148684..3150324
Molecular Weight (calculated) 29483.80 Da
IEP (calculated) 4.77
GRAVY (calculated) -0.62
Length 264 amino acids
Sequence (TAIR10)
(BLAST)
001: MGYGKHNRSK GGNSSRGRTD NLAREDESLP LDQEPEDEAP VPKVQLAMWD FGQCDAKRCT GRKLARFNLL KELRVNTGFG GVVLSPVGRQ CVSREDYDLI
101: KRKGLAVVDC SWARLTDVPF AKLRCTAPRL LPWLVAANPV NYGRPCELSC VEALSAALIL CGEKETAELL LGKFKWGHAF LSLNKDILKE YSKCENSAEI
201: ISVQNSWLTQ QTQIPKQPPA LEEHVKKDGE SGDESEEDDE DGLPPLERNM NHIKLEDSEE EDSE
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)