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AT5G52660.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
nucleus 1.000
ASURE: nucleus
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Homeodomain-like superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Homeodomain-like superfamily protein; CONTAINS InterPro DOMAIN/s: SANT, DNA-binding (InterPro:IPR001005), Homeodomain-like (InterPro:IPR009057), Myb, DNA-binding (InterPro:IPR014778), HTH transcriptional regulator, Myb-type, DNA-binding (InterPro:IPR017930), Myb-like DNA-binding domain, SHAQKYF class (InterPro:IPR006447); BEST Arabidopsis thaliana protein match is: Homeodomain-like superfamily protein (TAIR:AT4G01280.1); Has 1357 Blast hits to 1347 proteins in 119 species: Archae - 0; Bacteria - 4; Metazoa - 93; Fungi - 5; Plants - 1057; Viruses - 0; Other Eukaryotes - 198 (source: NCBI BLink).
Protein Annotations
eggNOG:COG5269eggNOG:KOG0724EMBL:AB025606EMBL:AJ937210EMBL:AY087690EMBL:AY550303EMBL:BT002002
EMBL:BT025882EMBL:CP002688EnsemblPlants:AT5G52660EnsemblPlants:AT5G52660.1EnsemblPlants:AT5G52660.2entrez:835343ExpressionAtlas:Q8H0W3
Gene3D:1.10.10.60GeneID:835343Genevisible:Q8H0W3GO:GO:0003677GO:GO:0003700GO:GO:0005634GO:GO:0006351
GO:GO:0009651GO:GO:0009723GO:GO:0009737GO:GO:0009739GO:GO:0009751GO:GO:0009753GO:GO:0046686
hmmpanther:PTHR12802hmmpanther:PTHR12802:SF48HOGENOM:HOG000237512InParanoid:Q8H0W3InterPro:IPR001005InterPro:IPR006447InterPro:IPR009057
InterPro:IPR017930KEGG:ath:AT5G52660OMA:FMFRPESPaxDb:Q8H0W3Pfam:PF00249Pfscan:PS51294PhylomeDB:Q8H0W3
PRO:PR:Q8H0W3PROSITE:PS51294ProteinModelPortal:Q8H0W3Proteomes:UP000006548RefSeq:NP_568776.2RefSeq:NP_851177.1SMART:SM00717
SMR:Q8H0W3STRING:3702.AT5G52660.2SUPFAM:SSF46689TAIR:AT5G52660TIGRfam:TIGR01557TIGRFAMs:TIGR01557UniGene:At.29606
UniGene:At.67328UniProt:Q8LAP4
Coordinates (TAIR10) chr5:-:21359423..21362037
Molecular Weight (calculated) 36195.50 Da
IEP (calculated) 9.45
GRAVY (calculated) -0.61
Length 330 amino acids
Sequence (TAIR10)
(BLAST)
001: MVSRNSDGYF LDPTGMTVPG LGPSFTAAVS SSSSPTTSST AVAVADVTAM VSSSEEDLSK KIRKPYTITK SRESWTEPEH DKFLEALQLF DRDWKKIEAF
101: IGSKTVIQIR SHAQKYFLKV QKSGTGEHLP PPRPKRKAAH PYPQKAHKNV QLQVPGSFKS TSEPNDPSFM FRPESSSMLM TSPTTAAAAP WTNNAQTISF
201: TPLPKGAGAN NNCSSSSENT PRPRSNRDAR DHGNVGHSLR VLPDFAQVYG FIGSVFDPYA SNHLQKLKKM DPIDVETVLL LMRNLSINLS SPDFEDHRRL
301: LSSYDIGSET ATDHGGVNKT LNKDPPEIST
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)