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AT3G03440.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

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SUBAcon:
nucleus 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : ARM repeat superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
ARM repeat superfamily protein; FUNCTIONS IN: binding; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Armadillo-like helical (InterPro:IPR011989), Armadillo (InterPro:IPR000225), Armadillo-type fold (InterPro:IPR016024); BEST Arabidopsis thaliana protein match is: ARM repeat superfamily protein (TAIR:AT4G12710.1); Has 4476 Blast hits to 2974 proteins in 239 species: Archae - 0; Bacteria - 8; Metazoa - 931; Fungi - 611; Plants - 2534; Viruses - 0; Other Eukaryotes - 392 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410XRTNeggNOG:KOG0167EMBL:CP002686EnsemblPlants:AT3G03440
EnsemblPlants:AT3G03440.1entrez:821253Gene3D:1.25.10.10GeneID:821253
Gramene:AT3G03440.1hmmpanther:PTHR23315hmmpanther:PTHR23315:SF65InParanoid:F4J139
InterPro:IPR000225InterPro:IPR011989InterPro:IPR016024KEGG:ath:AT3G03440
OMA:NSQAKNDPaxDb:F4J139Pfam:PF00514Pfscan:PS50176
PRIDE:F4J139PROSITE:PS50176ProteinModelPortal:F4J139Proteomes:UP000006548
RefSeq:NP_186994.2SMART:SM00185SMR:F4J139STRING:3702.AT3G03440.1
SUPFAM:SSF48371TAIR:AT3G03440UniGene:At.40980UniProt:F4J139
Coordinates (TAIR10) chr3:+:815709..818568
Molecular Weight (calculated) 43681.50 Da
IEP (calculated) 7.04
GRAVY (calculated) -0.07
Length 408 amino acids
Sequence (TAIR10)
(BLAST)
001: MDLAGETNSL ISTVASSSSC SSSVSSIDTS LDCDSPRGGD VDHELLHTAV SVSSSVSVSS SSSASIQRVL SLIRSEDCDS RLFAAKEIRR LTKTSHRCRR
101: HFSQAVEPLV SMLRFDSPES HHEAALLALL NLAVKDEKNK VSIIEAGALE PIINFLQSNS PTLQEYASAS LLTLSASANN KPIIGANGVV PLLVKVIKHG
201: SPQAKADAVM ALSNLSTLPD NLSMILATKP LSPILNLLKS SKKSSKTSEK CCSLIEALMV SGEEARTGLV SDEGGVLAVV EVLENGSLQA REHAVGVLLT
301: LCQSDRSKYR EPILREGVIP GLLELTVQGT SKSRIKAQRL LCLLRNSESP RSEVQPDTIE NIVSSLISHI DGDDQSGKAK KMLAEMVQVS MEKSLRHLQE
401: RASTLVRP
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)