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AT1G13360.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding :
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G25870.1); Has 69 Blast hits to 69 proteins in 16 species: Archae - 0; Bacteria - 0; Metazoa - 6; Fungi - 0; Plants - 63; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Protein Annotations
DNASU:837896eggNOG:ENOG410XPAXeggNOG:KOG0670EMBL:AC011810
EMBL:BT002811EMBL:BT004368EMBL:CP002684EnsemblPlants:AT1G13360
EnsemblPlants:AT1G13360.1entrez:837896ExpressionAtlas:Q9FX61GeneID:837896
Gramene:AT1G13360.1hmmpanther:PTHR34539hmmpanther:PTHR34539:SF1HOGENOM:HOG000237460
OMA:ALTECPPPhylomeDB:Q9FX61Proteomes:UP000006548RefSeq:NP_683304.1
STRING:3702.AT1G13360.1TAIR:AT1G13360UniGene:At.44076UniProt:Q9FX61
Coordinates (TAIR10) chr1:-:4577229..4577813
Molecular Weight (calculated) 21045.70 Da
IEP (calculated) 3.66
GRAVY (calculated) -0.52
Length 194 amino acids
Sequence (TAIR10)
(BLAST)
001: MEKKLLDITR TDSAEKKRVR DESFDEAVLD SPEVKRLRDD LFDVLDDSDP EPVSQDLDSV MKSFEDELST VTTTTAQGSS TAGETQPDLG YLLEASDDEL
101: GLPPPPSISP VPVAKEEVTT ETVTDLVRAS SDSSGIDEIW GFEDHVSNYG GLDFGSGVGD GGDYVAVEGL FEFSDDCFDS GDLFSWRSES LPAE
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)