AT2G46080.1
|
Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 0.887 What is SUBAcon? |
|||||||||||||||||||||||||||||
| Experimental Localisations and PPI |
|
||||||||||||||||||||||||||||
|
SUBAcon links
AGI-AGI relationships |
|
||||||||||||||||||||||||||||
| Description (TAIR10) | protein_coding : | ||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
|||||||||||||||||||||||||||||
| Computational Description (TAIR10) |
CONTAINS InterPro DOMAIN/s: Protein BYPASS related (InterPro:IPR008511); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF793) (TAIR:AT1G01550.2); Has 153 Blast hits to 139 proteins in 20 species: Archae - 0; Bacteria - 2; Metazoa - 1; Fungi - 0; Plants - 150; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | ||||||||||||||||||||||||||||
| Protein Annotations |
|
||||||||||||||||||||||||||||
| Coordinates (TAIR10) | chr2:-:18948317..18949360 | ||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 39354.30 Da | ||||||||||||||||||||||||||||
| IEP (calculated) | 4.94 | ||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.24 | ||||||||||||||||||||||||||||
| Length | 347 amino acids | ||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MSRPQDPPRG FFPFGNPFRM LSSKGSDLSP WLLSLLNGFE LRLEERLKKL MPKNKDDILT LSWMKLAMES LCETHKNINT LITDLQLPVS DWEEKWVDVY 101: LNISVRLLDL CNAFSSELTR LNQGDLFLKC VLHNLQSDSG EKYLQARSSL DSWRQHVNTN NPRIENCRAV LDSLVKSLSL PKVKNSPKGK VLMRAFYGVK 201: VQTVYICSVF TAAWSDSTKD LFDLPVSEKP LWAKVFTDMQ SVVNAEIRDM LSSGRTTILK ELESVDASVE KLYPMIQDGV DPVEVEFFKD NVMELGTQAE 301: KLSQGLDQLL EEVDSFFKLT LRGRDVLLCN LRSSDSISGN AVGEDVD |
||||||||||||||||||||||||||||
| See Also |
|
||||||||||||||||||||||||||||
Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)