AT1G27760.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:cytosol 0.500 nucleus 0.500 ASURE: cytosol,nucleus What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : interferon-related developmental regulator family protein / IFRD protein family | ||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
Encodes a protein with similarity to human interferon-related developmental regulator (IFRD)that is involved in salt tolerance. Loss of function mutations are hypersensitive to salt stress and have reduced fertility. SAT32 is found in the cytoplasm but appears to translocate to the nucleus when plants are subject to salt stress. | ||||||||||||||||||||||||||||||||||||
| Computational Description (TAIR10) |
SALT-TOLERANCE 32 (SAT32); FUNCTIONS IN: binding; INVOLVED IN: response to salt stress; LOCATED IN: nucleus, cytoplasm; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Interferon-related developmental regulator, N-terminal (InterPro:IPR007701), Interferon-related developmental regulator, C-terminal (InterPro:IPR006921), Armadillo-type fold (InterPro:IPR016024); Has 353 Blast hits to 353 proteins in 113 species: Archae - 0; Bacteria - 0; Metazoa - 173; Fungi - 61; Plants - 99; Viruses - 0; Other Eukaryotes - 20 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr1:+:9668895..9671322 | ||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 48121.70 Da | ||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 6.75 | ||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.26 | ||||||||||||||||||||||||||||||||||||
| Length | 437 amino acids | ||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MGRKSQRKNA TMFDSDDDTS SVSSSSTMPS ERLLNPGMDE VTVLKDALLD QSLDALYEKR EQALATIVDA FNSDLQYEFV EKKFATLLHQ CLHCTKKGST 101: KETSLATHVI GLLALTVGLG DHAQEVLEES VTPLSQALKS GREILKITSI LECLAVITFV GGNDPEQTEK SMQIIWQMIH PKLGSNVVAT KPSPAVISAV 201: VSSWAFLLTT VDRWTLGPKI FQETVTYLST LLEKDDRSVR IAAGEALAVI YELGTLEKFA AEVKGSANGS VKEGGVSQEA LMHMHGLKAK VTKQVRELSV 301: EAGGKGSAKK DLNTQRNLFK DLVEFLEDGY APETSTKVGG DYLQTSTWYQ MIQLNYLKHF LGGGFIKHMQ ENEFLHDVFS FTPKKIGGGK LSNDEKRLFK 401: SPNSALNKAR TQFLAKQRML AKNMNVGHYA ATAMEEE |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)