suba logo
AT1G24267.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

.
SUBAcon:
mitochondrion 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:31520498 (2020): mitochondrion
  • PMID:31023727 (2019): mitochondrion
  • PMID:27943495 (2017): mitochondrion
  • PMID:21896887 (2011): mitochondrion mitochondrial envelope mitochondrial outer membrane
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Protein of unknown function (DUF1664)
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Protein of unknown function (DUF1664); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: cultured cell; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1664 (InterPro:IPR012458); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF1664) (TAIR:AT1G24265.2); Has 154 Blast hits to 152 proteins in 21 species: Archae - 2; Bacteria - 4; Metazoa - 0; Fungi - 1; Plants - 147; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410IGPQeggNOG:ENOG410YEW3EMBL:AK117725EMBL:BT006240
EMBL:CP002684EnsemblPlants:AT1G24267EnsemblPlants:AT1G24267.1entrez:839042
ExpressionAtlas:Q8GYC5GeneID:839042GO:GO:0016021Gramene:AT1G24267.1
hmmpanther:PTHR31903hmmpanther:PTHR31903:SF0HOGENOM:HOG000237434InterPro:IPR012458
Pfam:PF07889PhylomeDB:Q8GYC5Proteomes:UP000006548RefSeq:NP_849705.1
STRING:3702.AT1G24267.2TAIR:AT1G24267TMHMM:TMhelixUniGene:At.44208
UniProt:Q8GYC5
Coordinates (TAIR10) chr1:-:8604451..8607241
Molecular Weight (calculated) 36681.80 Da
IEP (calculated) 10.07
GRAVY (calculated) -0.29
Length 343 amino acids
Sequence (TAIR10)
(BLAST)
001: MAIPLGKLTI LIGAGLVGSV LAKEGSLPDV SSFVSGALKM VFRQLKQEEP AKSASKPRND TLMAQVNSLR HELSLLSSNR PITIVTTAGS GGKKYGYIII
101: IGVIGYGYVW WKGWKLPDLM FATRRSLSDA CNSVGSQIDG FYTSLSGTKK ELSSKIDGMG RSLDANTEII QDTGREVMEL QRGTENIKDD VKFVFDAVEN
201: LASKVYRIEG NQDITLKGVG ALHAQVRENK RIQESNKALP STSAVPALEA APMTPSSRTL SLPPASPRES QSPSTSNGAQ QSRGPLQHTQ SMSGLKEISE
301: NGTHSGETTG NTSSGLFSIF SIPRIGRTRS VVNTVPTNSI GPQ
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)