suba logo
AT5G52530.1
Subcellular Consensus
(Prediction and Experimental)

min: heatmap :max

.
SUBAcon:
nucleus 1.000
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : dentin sialophosphoprotein-related
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
dentin sialophosphoprotein-related; Has 931 Blast hits to 739 proteins in 178 species: Archae - 6; Bacteria - 85; Metazoa - 392; Fungi - 124; Plants - 76; Viruses - 5; Other Eukaryotes - 243 (source: NCBI BLink).
Protein Annotations
EMBL:AB025606EMBL:AP000378EMBL:AY064052EMBL:AY122988EMBL:CP002688EnsemblPlants:AT5G52530EnsemblPlants:AT5G52530.1
EnsemblPlants:AT5G52530.2EnsemblPlants:AT5G52530.3entrez:835329GeneID:835329Gramene:AT5G52530.1Gramene:AT5G52530.2Gramene:AT5G52530.3
hmmpanther:PTHR34536hmmpanther:PTHR34536:SF2HOGENOM:HOG000152464IntAct:Q9FGR1KEGG:ath:AT5G52530OMA:TESIAPKPhylomeDB:Q9FGR1
Proteomes:UP000006548RefSeq:NP_001190523.1RefSeq:NP_200066.1RefSeq:NP_851176.1TAIR:AT5G52530UniGene:At.21910UniProt:Q9FGR1
Coordinates (TAIR10) chr5:+:21318215..21320882
Molecular Weight (calculated) 92423.00 Da
IEP (calculated) 6.94
GRAVY (calculated) -1.14
Length 828 amino acids
Sequence (TAIR10)
(BLAST)
001: MTSNKGAIIP PELPWKPVAK GSRSSTRRGK KLVKRVAASD IESEDKSSTH TLVAGESKRP KLGVSVLGQH FVERVEHVPI KKRIFVVSSP SPSPSSSKRS
101: SAQREGSEHK AQINHVLPVS RLNPNLVSDV RDEKPDYSVH DFSGIKILAD AACSTDVSND FAPAVDRLPA EEFAVQLQDT STISTHVEGN DSSAGTADVS
201: HTAVDSGDQS GQGKSNIVAP QKHPLTNLCN ELADEQSVEH SRVTSGGIIA PKKTCIALSN ESSTERPKDN VEASESEPLA PDSGAVTVSE KLSADEPTEK
301: NNEGLKDVKF LWDLNIPCDV EDEASRRDEE GEITESIAPK GSEPFDGSKH SMDGVIASDE HTKFSSPSKP NDEAAATNDK DCQSGYDSQF EDGELREPYP
401: WEENEEVEQL DYGSEPEDER FYSMGSEKGI LTDENFSHVK CESGDALRVG QANEGSDIEK QAVVNMSDSH PKKGSSSPSR SFGSKPYKEV PSHDAIQRRR
501: PDTYEEVSTG PDRFARRDDR SGMRMRNRSP QRGYFSGWDS KRRFSPPNYK DGSYGSGRPW HKRMADDRGM MNGFDESGSG QGPGPEPEPE GYVRRQFSNG
601: GYRGRFKRFP DGGDRKFRGP YTDTNQFSGR MHNRMSGNRR ERGGSPVVRR LHHPQSESRS RSRSPVLWNG RNRSPPPPPG GFRADERMTE RVRLPFQKRF
701: PADQEMGYMS PPRNRMSSPR FFEGRNNGAG ENYNSFRERK FRPGQRFYVG NSMRRPNSDN NNLRPFIPNR RFDNPEESTG GNRFEMTQQR RTRRSETTED
801: GGDVIRRFKF NEEQQSVVVA NDNNNKES
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)