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AT5G46760.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 1.000
ASURE: nucleus
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:31911558 (2020): mitochondrion
  • PMID:28865150 (2017): extracellular region plant-type cell wall
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : Basic helix-loop-helix (bHLH) DNA-binding family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Basic helix-loop-helix (bHLH) DNA-binding family protein; FUNCTIONS IN: protein binding, DNA binding, sequence-specific DNA binding transcription factor activity; INVOLVED IN: regulation of transcription; LOCATED IN: nucleus; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Helix-loop-helix DNA-binding domain (InterPro:IPR001092), Helix-loop-helix DNA-binding (InterPro:IPR011598); BEST Arabidopsis thaliana protein match is: Basic helix-loop-helix (bHLH) DNA-binding family protein (TAIR:AT4G17880.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Protein Annotations
BioGrid:19967DIP:DIP-58585NeggNOG:ENOG410IGFUeggNOG:ENOG410YCJJ
EMBL:AB016882EMBL:AF251690EMBL:CP002688EnsemblPlants:AT5G46760
EnsemblPlants:AT5G46760.1entrez:834719Gene3D:4.10.280.10GeneID:834719
Genevisible:Q9FIP9GO:GO:0003677GO:GO:0003700GO:GO:0005634
GO:GO:0006351GO:GO:0006355GO:GO:0006952GO:GO:0009718
GO:GO:0009753GO:GO:0043425GO:GO:0045893Gramene:AT5G46760.1
hmmpanther:PTHR11514hmmpanther:PTHR11514:SF43HOGENOM:HOG000238207InterPro:IPR011598
InterPro:IPR025610iPTMnet:Q9FIP9KEGG:ath:AT5G46760ncoils:Coil
OMA:AMEAFIGPaxDb:Q9FIP9PDB:4RQWPDB:4RRU
PDB:4RS9PDB:4YWCPDB:4YZ6PDBsum:4RQW
PDBsum:4RRUPDBsum:4RS9PDBsum:4YWCPDBsum:4YZ6
Pfam:PF00010Pfam:PF14215Pfam:Q9FIP9Pfscan:PS50888
PhylomeDB:Q9FIP9PRIDE:Q9FIP9PRO:PR:Q9FIP9PROSITE:PS50888
ProteinModelPortal:Q9FIP9Proteomes:UP000006548RefSeq:NP_199488.1SMART:SM00353
SMR:Q9FIP9STRING:3702.AT5G46760.1SUPFAM:SSF47459TAIR:AT5G46760
UniGene:At.28315UniProt:Q9FIP9
Coordinates (TAIR10) chr5:+:18974231..18976009
Molecular Weight (calculated) 64995.40 Da
IEP (calculated) 4.98
GRAVY (calculated) -0.70
Length 592 amino acids
Sequence (TAIR10)
(BLAST)
001: MNGTTSSINF LTSDDDASAA AMEAFIGTNH HSSLFPPPPQ QPPQPQFNED TLQQRLQALI ESAGENWTYA IFWQISHDFD SSTGDNTVIL GWGDGYYKGE
101: EDKEKKKNNT NTAEQEHRKR VIRELNSLIS GGIGVSDESN DEEVTDTEWF FLVSMTQSFV NGVGLPGESF LNSRVIWLSG SGALTGSGCE RAGQGQIYGL
201: KTMVCIATQN GVVELGSSEV ISQSSDLMHK VNNLFNFNNG GGNNGVEASS WGFNLNPDQG ENDPALWISE PTNTGIESPA RVNNGNNSNS NSKSDSHQIS
301: KLEKNDISSV ENQNRQSSCL VEKDLTFQGG LLKSNETLSF CGNESSKKRT SVSKGSNNDE GMLSFSTVVR SAANDSDHSD LEASVVKEAI VVEPPEKKPR
401: KRGRKPANGR EEPLNHVEAE RQRREKLNQR FYSLRAVVPN VSKMDKASLL GDAISYINEL KSKLQQAESD KEEIQKKLDG MSKEGNNGKG CGSRAKERKS
501: SNQDSTASSI EMEIDVKIIG WDVMIRVQCG KKDHPGARFM EALKELDLEV NHASLSVVND LMIQQATVKM GSQFFNHDQL KVALMTKVGE NY
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)