AT5G17160.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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| FP Images |
7-day old Arabidopsis seedling (no marker)
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : | ||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G03130.1); Has 14330 Blast hits to 10381 proteins in 896 species: Archae - 94; Bacteria - 2881; Metazoa - 4019; Fungi - 1576; Plants - 515; Viruses - 110; Other Eukaryotes - 5135 (source: NCBI BLink). | ||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr5:-:5639843..5642427 | ||||||||||||||||||||||||
| Molecular Weight (calculated) | 62617.30 Da | ||||||||||||||||||||||||
| IEP (calculated) | 4.37 | ||||||||||||||||||||||||
| GRAVY (calculated) | -0.91 | ||||||||||||||||||||||||
| Length | 569 amino acids | ||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MDFHSLLRRD LQFLCKRNKI PANMTNIAMA DALKSLEIVD GLDEYMNQSE SSAPHSPTSV AKLPPSTATR TTRRKTTTKA EPQPSSQLVS RSCRSTSKSL 101: AGDMDQENIN KNVAQEMKTS NVKFEANVLK TPAAGSTRKT SAATSCTKKD ELVQSVYSTR RSTRLLEKCM ADLSLKTKET VDNKPAKNED TEQKVSAQEK 201: NLTGSEGEVI PGRDLSVSME QVWENLKNDS DKIAGDLEVI VVMDANTEAN KEEMNEVTAD KKESENSLVQ VDKEEETLQA ICEEGPKKND NDQEIGDLVI 301: YVDVSDIPLL ESAITETHND DNESKNVLAI DRSVDQQETE HAIQENDAEP ETKVNQTDSD AGDSKTKQAI QENDSEPEKI NNFDEETMVD QTDSDSETEP 401: EENHSGVDSD GTISEADSNQ AVVGSDIADE EMTLSGSEGS AATAPNSPPR LEEAKVIKTT LVSPFAVESI STQFPRPSKS TTPLKNSPLK LVNENKENNM 501: EMMMMNVNNN ENGESKGEEG KKKKKVTIDE ENLKNTSIRQ LEKMVKELSI KTSNRTALQV LPGNNKTAE |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)