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AT5G15680.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

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SUBAcon:
nucleus 0.892
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:25900983 (2015): Golgi
  • PMID:25900983 (2015): Golgi trans-Golgi network
  • PMID:25900983 (2015): Golgi trans-Golgi network early endosome
  • PMID:25900983 (2015): Golgi trans-Golgi network multivesicular body
  • PMID:17317660 (2007): plasma membrane
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : ARM repeat superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
ARM repeat superfamily protein; FUNCTIONS IN: binding; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane, membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Armadillo-type fold (InterPro:IPR016024); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410XSZSeggNOG:KOG1825EMBL:CP002688EnsemblPlants:AT5G15680
EnsemblPlants:AT5G15680.1entrez:831422GeneID:831422GO:GO:0005886
GO:GO:0016020Gramene:AT5G15680.1hmmpanther:PTHR12295InParanoid:F4KB73
InterPro:IPR016024InterPro:IPR025481InterPro:IPR025614InterPro:IPR029473
iPTMnet:F4KB73KEGG:ath:AT5G15680ncoils:CoilOMA:ETKLDQW
PaxDb:F4KB73Pfam:PF14222Pfam:PF14225Pfam:PF14228
PRIDE:F4KB73ProteinModelPortal:F4KB73Proteomes:UP000006548RefSeq:NP_197072.3
STRING:3702.AT5G15680.1SUPFAM:SSF48371SwissPalm:F4KB73TAIR:AT5G15680
UniGene:At.43593UniProt:F4KB73
Coordinates (TAIR10) chr5:-:5101188..5110793
Molecular Weight (calculated) 242512.00 Da
IEP (calculated) 6.66
GRAVY (calculated) -0.16
Length 2153 amino acids
Sequence (TAIR10)
(BLAST)
0001: MKSGSAAKLI VEALLQRFLP LARRRIETAQ AQDGQYLRPS DPAYEQVLDS LAMIARHTPV PLLEALLRWR ESESPKGAND ASTFQRKLAV ECIFCSACIR
0101: FVECCPQEGL TEKLWSGLEN FVFDWLINAD RVVSQVEYPS LVDLRGLLLD LVAQLLGALS RIRFSSVTER FFMELNTRRI DTSVARSETL SIINGMRYLK
0201: LGVKSEGGLN ASASFVAKAN PLIRDIHKRK SELYHALCNM LSNILAPLSD GGKSQWPPSV AEPALTLWYE AVGRIRVQLI QWMEKQSKHL GVGYPLVSLL
0301: LCLGDPLIFH HNLSSHMEQL YKLLRDKNHR YMALDCLHRV LRFYLSVYAS SQPPNRIWDY LDSVTSQLLT VLRKGMLTQD VQQDKLVEFC VTIAEHNLDF
0401: AMNHMLLELL KQDSPSEAKI IGLRALLALV MSPSSQYVGL EIFKGHGIGH YIPKVKAAIE SILRSCHRTY SQALLTSSRT TIDAVNKEKS QGSLFQSVLK
0501: CIPYLIEEVG RSDKITEIIP QHGISIDPGV RVEAVQVLNR IVRYLPHRRF AVMRGMANFI LKLPDEFPLL IQASLGRLLE LMRFWRACLV DDRQDTDAEE
0601: ENKTAKGNDR FKKLSFHQAA DAIEFRASDI DAVGLIFLSS VDSQIRHTAL ELLRCVRALR NDIRDLMIQE HPDHVMKFEA EPIYMIDVLE EHGDDIVQSC
0701: YWDSARPFDL RRDSDAIPSD VTLQSIIFES LDKNKWGRCL SELVKYAAEL CPRSVQEAKS EIMHRLAHIT PVEFGGKANQ SQDTDNKLDQ WLLYAMFVCS
0801: CPPDGKDAGS IASTRDMYHL IFPYLRFGSE THNHAATMAL GRSHLEACEI MFSELASFME EISSETETKP KWKIQKGGRR EDLRVHVSNI YRTVSENVWP
0901: GMLARKPVFR LHYLRFIEDS TRQISLAPHE SFQDMQPLRY ALASVLRFLA PEFVESKSEK FDVRSRKRLF DLLLSWSDDT GNTWGQDGVS DYRREVERYK
1001: TSQHNRSKDS VDKISFDKEL NEQIEAIQWA SLNAMASLLY GPCFDDNARK MSGRVISWIN SLFIEPAPRV PFGYSPADPR TPSYSKYTGE GGRGTTGRDR
1101: HRGGHQRVAL AKLALKNLLL TNLDLFPACI DQCYYSDAAI ADGYFSVLAE VYMRQEIPKC EIQRLLSLIL YKVVDPSRQI RDDALQMLET LSMREWAEDG
1201: IEGSGGYRAA VVGNLPDSYQ QFQYKLSCKL AKDHPELSQL LCEEIMQRQL DAVDIIAQHQ VLTCMAPWIE NLNFWKLKDS GWSERLLKSL YYVTWRHGDQ
1301: FPDEIEKLWS TIASKPRNIS PVLDFLITKG IEDCDSNASA EITGAFATYF SVAKRVSLYL ARICPQRTID HLVYQLSQRM LEDSIEPIGY SANRGDSNGN
1401: FVLEFSQGPA TAPQVVSVAD SQPHMSPLLV RGSLDGPLRN TSGSLSWRTA GMTGRSASGP LSPMPPELNI VPVATGRSGQ LLPSLVNASG PLMGVRSSTG
1501: SLRSRHVSRD SGDYLIDTPN SGEDVLHSGI AMHGVNAKEL QSALQGHQQH SLTHADIALI LLAEIAYEND EDFREHLPLL FHVTFVSMDS SEDIVLEHCQ
1601: HLLVNLLYSL AGRHLELYEV ENSDGENKQQ VVSLIKYVQS KRGSMMWENE DPTVVRTDLP SAALLSALVQ SMVDAIFFQG DLRETWGTEA LKWAMECTSR
1701: HLACRSHQIY RALRPSVTSD ACVSLLRCLH RCLSNPIPPV LGFIMEILLT LQVMVENMEP EKVILYPQLF WGCVAMMHTD FVHVYCQVLE LFSRIIDRLS
1801: FRDKTTENVL LSSMPRDEFN TNDLGEFQRS ESRGYEMPPS SGTLPKFEGV QPLVLKGLMS TVSHEFSIEV LSRITVPSCD SIFGDAETRL LMHITGLLPW
1901: LCLQLTQDQV MVSALPLQQQ YQKACSVASN IAVWCRAKSL DELATVFVAY ARGEIKRVEN LLACVSPLLC NKWFPKHSAL AFGHLLRLLK KGPVDYQRVI
2001: LLMLKALLQH TPMDASQSPH MYTIVSQLVE STLCWEALSV LEALLQSCSP VQGGTGGSHP QDSSYSENGT DEKTLVPQTS FKARSGPLQY AMMAATMSQP
2101: FPLGAAAAES GIPPRDVALQ NTRLMLGRVL DNCALGRRDY RRLVPFVTTI ANM
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)