AT4G28600.1
|
Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:plasma membrane 1.000 ASURE: plasma membrane What is SUBAcon? |
|
||||||||||||||||||||||||||||||||||||||||
| Experimental Localisations and PPI |
|
||||||||||||||||||||||||||||||||||||||||
|
SUBAcon links
AGI-AGI relationships |
|
||||||||||||||||||||||||||||||||||||||||
| Description (TAIR10) | protein_coding : no pollen germination related 2 | ||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
encodes a calmodulin-binding protein that is expressed in pollen, suspension culture cells, flowers, and fruits. | ||||||||||||||||||||||||||||||||||||||||
| Computational Description (TAIR10) |
no pollen germination related 2 (NPGR2); FUNCTIONS IN: calmodulin binding; LOCATED IN: plasma membrane; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Tetratricopeptide-like helical (InterPro:IPR011990), Tetratricopeptide repeat-containing (InterPro:IPR013026), Tetratricopeptide repeat (InterPro:IPR019734); BEST Arabidopsis thaliana protein match is: tetratricopeptide repeat (TPR)-containing protein (TAIR:AT2G43040.1); Has 2060 Blast hits to 1763 proteins in 357 species: Archae - 278; Bacteria - 547; Metazoa - 329; Fungi - 78; Plants - 247; Viruses - 0; Other Eukaryotes - 581 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
|
||||||||||||||||||||||||||||||||||||||||
| Coordinates (TAIR10) | chr4:+:14130046..14132599 | ||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 82737.70 Da | ||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 7.81 | ||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.30 | ||||||||||||||||||||||||||||||||||||||||
| Length | 739 amino acids | ||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MKNSEIRPEK LHLRKLRKSL RKIRMKCLCS GEQMRHREEE DKKSEVGVGR DYNGSSALST AESENAKKLD NGNIEEAELS LRETSSLNYE EARALLGRIE 101: YQKGNIEAAL RVFEGIDING ITVKMKTALT VREDRKHRRR SKGGFSTAPS PAMSKHAVSL LFEAIFLKAK SLQRLGRFQE AAESCRVILD IVETSLAEGA 201: SDNVTGDIKL QETLTKAVEL LPELWKLADS PRDAILSYRR ALLNHWKLDP ETTARIQKEY AVFLLYSGEE AVPPNLRSQT EGSFIPRNNV EEAILLLMLL 301: LRKVNLKRIS WDAAILDHLS FALTIAGDLT ALAKQFEELS PELLDQRELY HTLSLCYQGA GEGLVALGLL RKLFSEREDP NRTSGLLMAS KICGERSGLA 401: EEGLDYARKA IGNLGKECSQ LDGAARFVLG ITLTESSRMA VTETERIARQ SEGIQALESA DMTNPRVVHR LALENAEQRK LDSALAYAKE ALKLGAESDL 501: EVWLLLARVL SAQKRFSDAE TIVDAALNET GKWEQGKLLR LKAKLRLAKG EVKDAIKTYT QLLALLQVQS KSFNSAKKLP KGYVKELMSL ELGTWHDLAH 601: IYINLSQWRD AESCLSRSRL IAPYSSVRYH IEGVLYNRRG QLEEAMEAFT TALDIDPMHV PSLTSKAEIL LEVGNRSGIA VVRSFLMEAL RIDRLNHSAW 701: YNLGKMFKAE GSVSSMQEAV ECFQAAVTLE ETMPVEPFR |
||||||||||||||||||||||||||||||||||||||||
| See Also |
|
||||||||||||||||||||||||||||||||||||||||
Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)