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AT4G27050.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
plasma membrane 0.528
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : F-box/RNI-like superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
F-box/RNI-like superfamily protein; CONTAINS InterPro DOMAIN/s: F-box domain, cyclin-like (InterPro:IPR001810), F-box domain, Skp2-like (InterPro:IPR022364), FBD-like (InterPro:IPR006566), Leucine-rich repeat 2 (InterPro:IPR013101); BEST Arabidopsis thaliana protein match is: F-box/RNI-like superfamily protein (TAIR:AT2G29930.3); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Protein Annotations
BioGrid:14100eggNOG:ENOG410JHFZeggNOG:ENOG410ZQIVEMBL:AK316857
EMBL:AL035440EMBL:AL161566EMBL:AY062462EMBL:BT000114
EMBL:CP002687EnsemblPlants:AT4G27050EnsemblPlants:AT4G27050.1EnsemblPlants:AT4G27050.2
EnsemblPlants:AT4G27050.3EnsemblPlants:AT4G27050.4entrez:828813Gene3D:3.80.10.10
GeneID:828813Genevisible:Q9SZ44GO:GO:0016567Gramene:AT4G27050.1
Gramene:AT4G27050.2Gramene:AT4G27050.3Gramene:AT4G27050.4hmmpanther:PTHR31293
hmmpanther:PTHR31293:SF11HOGENOM:HOG000015201InParanoid:Q9SZ44IntAct:Q9SZ44
InterPro:IPR001810InterPro:IPR006566InterPro:IPR013101InterPro:IPR032675
KEGG:ath:AT4G27050OMA:GARINRWPaxDb:Q9SZ44Pfam:PF00646
Pfam:PF07723Pfam:Q9SZ44Pfscan:PS50181PhylomeDB:Q9SZ44
PIR:T04828PRIDE:Q9SZ44PRO:PR:Q9SZ44PROSITE:PS50181
ProteinModelPortal:Q9SZ44Proteomes:UP000006548RefSeq:NP_001031729.1RefSeq:NP_001078451.1
RefSeq:NP_194435.1RefSeq:NP_974624.1SMART:SM00579SMR:Q9SZ44
STRING:3702.AT4G27050.1SUPFAM:SSF52047SUPFAM:SSF81383TAIR:AT4G27050
UniGene:At.27335UniPathway:UPA00143UniProt:Q9SZ44
Coordinates (TAIR10) chr4:-:13575884..13577429
Molecular Weight (calculated) 51303.30 Da
IEP (calculated) 6.50
GRAVY (calculated) 0.02
Length 453 amino acids
Sequence (TAIR10)
(BLAST)
001: MDTDLISNLP DDVLGKILSL VPTKLAAATS VLSKRWRNLL PLVDSLDFDE TMLFYPDNKD GEDEASSYES GQRRRHSFSH FVDKTLALLS NAPLTEKFSL
101: KCYHEDDGAR INRWIRTALE RGCLELNLEA ANYLPIDSQY FTSNTLVKLT ISDGFYPGGH LLPFGGVFFP ALKTLTLVSV CFTSVEMINF FIHGCPALEE
201: LFLCVWMQYM SSPNVKRVTI TSDFDDDIQR PSMVLKTPSL VYLDYSSYVA GNYYVVLDSL VEARLDLRLY EPIIYDEDGL WNAEVFGNIT NLIEAIRTIK
301: ILHLSPSSLE VFYYCCDLPV LEDLVNLSIE SDKEKGWEVM PRLLNKSPNL QTLVVKGLVH RVTYCCGDAC ACIRMKDREI VSCLSRCRVK VLKILGYGGS
401: FRELKQMRHF LGKLKCLETV KVGVKEGSKK SNYLVANVMA LPRVSSKCKI QFI
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)