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AT5G22730.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
cytosol 0.997
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : F-box/RNI-like/FBD-like domains-containing protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
F-box/RNI-like/FBD-like domains-containing protein; CONTAINS InterPro DOMAIN/s: F-box domain, cyclin-like (InterPro:IPR001810), FBD (InterPro:IPR013596), F-box domain, Skp2-like (InterPro:IPR022364), FBD-like (InterPro:IPR006566), Leucine-rich repeat 2 (InterPro:IPR013101); BEST Arabidopsis thaliana protein match is: F-box/RNI-like/FBD-like domains-containing protein (TAIR:AT5G22610.1); Has 2101 Blast hits to 2057 proteins in 25 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 2101; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410JHFZeggNOG:ENOG410ZQIVEMBL:AB006699EMBL:CP002688
EnsemblPlants:AT5G22730EnsemblPlants:AT5G22730.1entrez:832336Gene3D:3.80.10.10
GeneID:832336Genevisible:Q9FNI8Gramene:AT5G22730.1hmmpanther:PTHR32212
hmmpanther:PTHR32212:SF126HOGENOM:HOG000015216InParanoid:Q9FNI8InterPro:IPR001810
InterPro:IPR006566InterPro:IPR013101InterPro:IPR032675KEGG:ath:AT5G22730
OMA:CLVNRKFPaxDb:Q9FNI8Pfam:PF00646Pfam:PF07723
Pfam:PF08387Pfam:Q9FNI8Pfscan:PS50181PhylomeDB:Q9FNI8
PRIDE:Q9FNI8PRO:PR:Q9FNI8PROSITE:PS50181ProteinModelPortal:Q9FNI8
Proteomes:UP000006548RefSeq:NP_197665.2SMART:SM00256SMART:SM00579
SUPFAM:SSF52047SUPFAM:SSF81383TAIR:AT5G22730UniGene:At.8430
UniProt:Q9FNI8
Coordinates (TAIR10) chr5:-:7551632..7553219
Molecular Weight (calculated) 53652.60 Da
IEP (calculated) 6.28
GRAVY (calculated) 0.07
Length 466 amino acids
Sequence (TAIR10)
(BLAST)
001: MLYEGYLKYM KAKYGERSQG TYFMAGEDLI SKLPDSLITQ ILLYLPIKDI VRTSSLSSRW KSLWLLIPRL DLDSEEFQDY NAFVGFMNKF IDFSGEEKIC
101: LDKLKLSSRK TVNDLPCVTR WIDFVVRRKL KHLDVECLVN RKFLEEMPLS LYVCDTLVNL RLHRVLLGKF EAVSLPCLKT MRLEENVYAN DVVLESLISS
201: CPVLKDLIIL RMFEDNVKVL RVHSLTLTSL NIDFNFGEGD DFVDGFDKKV SGVLIDAPRL KYLKFQDDLS GSKIITNSGS LAKVNVVYVF NENDCADVVD
301: IPRRNMVRNF LTSISGVSDM KISQHFVEFL YYYKDFDPLP QFCNLSRLKA EISLYFLEIL PTILESCPNL KSLVMVLEFY LQEEDEPIIF SSVPRCLVSS
401: LESVEIKKFN GRPAKMEVAR YFLENSGVLQ KLVLHLRCST HEDGFYILKD LLALPRGSST CRIVVC
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)