AT5G22730.1
Subcellular Consensus
(Prediction and Experimental) min: :max .
SUBAcon:cytosol 0.997 What is SUBAcon? |
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Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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Description (TAIR10) | protein_coding : F-box/RNI-like/FBD-like domains-containing protein | ||||||||||||||||||||||||||||||||||||||||||||
Curator Summary (TAIR10) |
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Computational Description (TAIR10) |
F-box/RNI-like/FBD-like domains-containing protein; CONTAINS InterPro DOMAIN/s: F-box domain, cyclin-like (InterPro:IPR001810), FBD (InterPro:IPR013596), F-box domain, Skp2-like (InterPro:IPR022364), FBD-like (InterPro:IPR006566), Leucine-rich repeat 2 (InterPro:IPR013101); BEST Arabidopsis thaliana protein match is: F-box/RNI-like/FBD-like domains-containing protein (TAIR:AT5G22610.1); Has 2101 Blast hits to 2057 proteins in 25 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 2101; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||
Protein Annotations |
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Coordinates (TAIR10) | chr5:-:7551632..7553219 | ||||||||||||||||||||||||||||||||||||||||||||
Molecular Weight (calculated) | 53652.60 Da | ||||||||||||||||||||||||||||||||||||||||||||
IEP (calculated) | 6.28 | ||||||||||||||||||||||||||||||||||||||||||||
GRAVY (calculated) | 0.07 | ||||||||||||||||||||||||||||||||||||||||||||
Length | 466 amino acids | ||||||||||||||||||||||||||||||||||||||||||||
Sequence (TAIR10) (BLAST) |
001: MLYEGYLKYM KAKYGERSQG TYFMAGEDLI SKLPDSLITQ ILLYLPIKDI VRTSSLSSRW KSLWLLIPRL DLDSEEFQDY NAFVGFMNKF IDFSGEEKIC 101: LDKLKLSSRK TVNDLPCVTR WIDFVVRRKL KHLDVECLVN RKFLEEMPLS LYVCDTLVNL RLHRVLLGKF EAVSLPCLKT MRLEENVYAN DVVLESLISS 201: CPVLKDLIIL RMFEDNVKVL RVHSLTLTSL NIDFNFGEGD DFVDGFDKKV SGVLIDAPRL KYLKFQDDLS GSKIITNSGS LAKVNVVYVF NENDCADVVD 301: IPRRNMVRNF LTSISGVSDM KISQHFVEFL YYYKDFDPLP QFCNLSRLKA EISLYFLEIL PTILESCPNL KSLVMVLEFY LQEEDEPIIF SSVPRCLVSS 401: LESVEIKKFN GRPAKMEVAR YFLENSGVLQ KLVLHLRCST HEDGFYILKD LLALPRGSST CRIVVC |
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See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)