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AT4G19865.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 0.976
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : Galactose oxidase/kelch repeat superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Galactose oxidase/kelch repeat superfamily protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 10 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: F-box domain, cyclin-like (InterPro:IPR001810), Galactose oxidase/kelch, beta-propeller (InterPro:IPR011043), Kelch repeat type 1 (InterPro:IPR006652), Kelch related (InterPro:IPR013089), Kelch-type beta propeller (InterPro:IPR015915); BEST Arabidopsis thaliana protein match is: Galactose oxidase/kelch repeat superfamily protein (TAIR:AT4G19870.2); Has 1691 Blast hits to 1648 proteins in 128 species: Archae - 0; Bacteria - 62; Metazoa - 500; Fungi - 9; Plants - 1061; Viruses - 10; Other Eukaryotes - 49 (source: NCBI BLink).
Protein Annotations
BioGrid:13025eggNOG:ENOG4110X8DeggNOG:KOG1072EMBL:AL024486
EMBL:AL161551EMBL:CP002687EnsemblPlants:AT4G19865EnsemblPlants:AT4G19865.1
entrez:827732Gene3D:2.130.10.80GeneID:827732Genevisible:P0C2G4
Gramene:AT4G19865.1hmmpanther:PTHR24414hmmpanther:PTHR24414:SF23HOGENOM:HOG000242515
InterPro:IPR001810InterPro:IPR006652InterPro:IPR015916KEGG:ath:AT4G19865
OMA:CAVIAIEPaxDb:P0C2G4Pfam:P0C2G4Pfam:PF00646
Pfam:PF01344Pfscan:PS50181PhylomeDB:P0C2G4PIR:T04768
PRIDE:P0C2G4PRO:PR:P0C2G4PROSITE:PS50181ProteinModelPortal:P0C2G4
Proteomes:UP000006548RefSeq:NP_849411.1SMART:SM00256SMART:SM00612
SMR:P0C2G4STRING:3702.AT4G19865.1SUPFAM:0052715SUPFAM:SSF81383
TAIR:AT4G19865UniGene:At.65407UniProt:P0C2G4
Coordinates (TAIR10) chr4:-:10781184..10782365
Molecular Weight (calculated) 44243.40 Da
IEP (calculated) 8.55
GRAVY (calculated) -0.26
Length 393 amino acids
Sequence (TAIR10)
(BLAST)
001: MNFQVEPPEK KKTKNSSPPH SPPSSSSPSL SLLPEEIVVH CLARISRLYY PTLSLVSKSF RSILSSTELY ATRSHLGSTE QCVYLCLWDP SYQFPQWLRL
101: LVNPNRTLAN SIIKKRRKKK KTTGQMLVPL TSSKFTSVSK ATVVVGSEIY VLGGPVDSAV RVLDCCSHTW RDAPSMNVSR MNAWACFHDG KIYVMGGCQG
201: LKDEPWAEVF NTKTQTWEGL PEPGSEVRKC SIDRSGVIEG KIEFGNVNEM CAYDTKLCKW EYCVNKSAAL RSECMIENVS YGFWNMRLLW YDNDIQKDYW
301: KRLEGLESLD DKYMRNGGSS GNTTKLVACG GKLLLLWEGY MKHNPNNRKK IWCAVIAIEK CDGGGVWGIV ESVDVLYTVP ISCQLLHCLV VSV
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)