AT2G40570.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:cytosol 0.981 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : initiator tRNA phosphoribosyl transferase family protein | ||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
initiator tRNA phosphoribosyl transferase family protein; FUNCTIONS IN: transferase activity, transferring pentosyl groups, protein tyrosine/serine/threonine phosphatase activity; INVOLVED IN: protein amino acid dephosphorylation, regulation of translation; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Initiator tRNA phosphoribosyl transferase (InterPro:IPR007306), Dual specificity phosphatase, catalytic domain (InterPro:IPR000340), tRNA A64-2'-O-ribosylphosphate transferase, RIT1 (InterPro:IPR016519); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr2:+:16941066..16943288 | ||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 58711.80 Da | ||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 6.56 | ||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.32 | ||||||||||||||||||||||||||||||||||||
| Length | 521 amino acids | ||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MGAKSEEPMM TTRDSIYRAA RNIKRRDNSL YNALRSIYQD SIFVHEISLL WPKLPLVANL RCGLWYSEKF DATCYFKSTD GHTNNLSFNT SRLNLHLPLL 101: AGEKGGCIII DSTRKGKRFP DSMSKTIPMW SCVVNRSIFN HWNRLCNIDA GLTSDDDGDN IRKLLDKWDC SLHLPLWVSN TERASIEARL DEWTRELDES 201: GADIASLASC LRKPLRPLWV SQKTVIWLNE VPEHDSWDFT PLILVSASAS GELQNRTSSE FSWNYIPGAG DDEESWARGL SPNVFWTHVD DLIHSGPDLC 301: NQKVAEIVEN DRVYRAHRGQ EAPQVVVKCS KSNGGVNHAK SDEILCLSAQ IPKVDEERLV FWLSSTNLAV GASQVACKET SIDCILNCDQ NPISVPVSYL 401: EEHLHLPMKG SKFDRFSISR NLPPAVNFAK LKMSSGKKVL VCCQDGEDIS ICVCLAILMS LFNEEGAFDG GKSFEEKSIT KMDMRRMLIF ICKYAVNARP 501: SRGNLKQVFG FLSSHRENSD E |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)