AT3G53680.1
|
Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 1.000 ASURE: nucleus What is SUBAcon? |
|||||||||||||||||||||||||||||||||||||||||
| Experimental Localisations and PPI |
|
||||||||||||||||||||||||||||||||||||||||
|
SUBAcon links
AGI-AGI relationships |
|
||||||||||||||||||||||||||||||||||||||||
| Description (TAIR10) | protein_coding : Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger domain | ||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
|||||||||||||||||||||||||||||||||||||||||
| Computational Description (TAIR10) |
Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger domain; FUNCTIONS IN: DNA binding, zinc ion binding; INVOLVED IN: regulation of transcription, DNA-dependent; LOCATED IN: nucleus; EXPRESSED IN: 15 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, PHD-type, conserved site (InterPro:IPR019786), Zinc finger, PHD-type (InterPro:IPR001965), Zinc finger, FYVE/PHD-type (InterPro:IPR011011), Acyl-CoA N-acyltransferase (InterPro:IPR016181), Zinc finger, PHD-finger (InterPro:IPR019787); BEST Arabidopsis thaliana protein match is: Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger domain (TAIR:AT2G37520.1); Has 3364 Blast hits to 2813 proteins in 199 species: Archae - 0; Bacteria - 0; Metazoa - 2189; Fungi - 239; Plants - 706; Viruses - 0; Other Eukaryotes - 230 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
|
||||||||||||||||||||||||||||||||||||||||
| Coordinates (TAIR10) | chr3:-:19892863..19897412 | ||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 93281.80 Da | ||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 7.14 | ||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.40 | ||||||||||||||||||||||||||||||||||||||||
| Length | 841 amino acids | ||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MGEATVCFAK ENSETKKDLK RDRLCFEQDN LDEEELYSSN KRQTKEPSND DMKSEISNPV PSPVVDNASS FRDITSNPAK SSSGDRVGSC SGSYETITDE 101: KHSEYCSSLA NSDAVPSSFE REIPKHLSTT GITKITFKLS KRNEDFCDLP MIQEHTWEGY PSNVASSTLG VKMLKKIDST NFLSNVKKLL GTGILDGARV 201: KYLSTSAARE LQGIIHSGGY LCGCTACDFS KVLGAYEFER HAGGKTKHPN NHIYLENGRP VYNVIQELRI APPDVLEEVI RKVAGSALSE EGFQAWKGSF 301: QQDKNMTEDD SNHIMDHSFQ SLVSYPGSGW SLDESQSSTP CFPEDNYFRE KICTKDTRHA HKPKAKKLTS HMFGMGCHKK VSGGGKWKRD NDLHRLLFLP 401: NGLPDGTELA YYVKSQKLLQ GYKQGSGIVC SCCDTKISPS QFEAHAGMAG RRQPYRRIHI SSGLSLHDIA VSLADGGHVI TTGDSDDMCS ICGNGGDLLL 501: CAGCPQAFHT ACLKFQSMPE GTWYCSSCND GPTSCKIATA SDPNLKPIVI RLTRVVKAPE SEIGGCVFCR SHDFSIGKFD DRTVILCDQC EKEYHVGCLR 601: ENELCDLKGI PQDKWFCCSD CSRIHRVLQS SASCGPQTIP TLLLDTISRK YREKGIYIDN GNTVEWRMLS GKSRYPEHLP LLSRAATIFR ECFDPIVAKS 701: GRDLIPVMVY GRNISGQEFG GMYCLVLMVN SLVVSAALLR IFGQKVAELP IVATSREYQG RGYFQGLFAC VENLLSSLNV ENLLLPAAEE AESIWTNKFG 801: FTKMTEHRLQ RYQREVQLTI FKGTSMLEKK VPSFSESTSI I |
||||||||||||||||||||||||||||||||||||||||
| See Also |
|
||||||||||||||||||||||||||||||||||||||||
Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)