suba logo
AT1G77390.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

.
SUBAcon:
nucleus 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
FP Images

7-day old Arabidopsis seedling (no marker)

RFP-At1g77390
(full-length)
overlay

SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : CYCLIN A1;2
Curator
Summary (TAIR10)
Encodes a core cell cycle gene involved in meiosis II during microsporogenesis. Recessive mutants exhibit delayed and asynchronous meiosis in pollen mother cell populations and uncoordinated nuclear division and cytokinesis resulting in dyad microspores.
Computational
Description (TAIR10)
CYCLIN A1;2 (CYCA1;2); CONTAINS InterPro DOMAIN/s: Cyclin, C-terminal (InterPro:IPR004367), Cyclin-like (InterPro:IPR011028), Cyclin-related (InterPro:IPR013763), Cyclin, N-terminal (InterPro:IPR006671), Cyclin, A/B/D/E (InterPro:IPR014400), Cyclin (InterPro:IPR006670); BEST Arabidopsis thaliana protein match is: Cyclin A1;1 (TAIR:AT1G44110.1); Has 4576 Blast hits to 4572 proteins in 373 species: Archae - 0; Bacteria - 0; Metazoa - 2076; Fungi - 561; Plants - 1184; Viruses - 37; Other Eukaryotes - 718 (source: NCBI BLink).
Protein Annotations
BioGrid:29294eggNOG:COG5024eggNOG:KOG0654EMBL:AC078898
EMBL:CP002684EnsemblPlants:AT1G77390EnsemblPlants:AT1G77390.1entrez:844075
Gene3D:1.10.472.10GeneID:844075Genevisible:Q9FVX0GO:GO:0005634
GO:GO:0005737GO:GO:0007135GO:GO:0007140GO:GO:0009556
GO:GO:0051301GO:GO:0051445Gramene:AT1G77390.1hmmpanther:PTHR10177
hmmpanther:PTHR10177:SF203HOGENOM:HOG000167672InParanoid:Q9FVX0InterPro:IPR004367
InterPro:IPR006671InterPro:IPR013763KEGG:ath:AT1G77390KO:K06627
OMA:AMLRYAPPaxDb:Q9FVX0Pfam:PF00134Pfam:PF02984
Pfam:Q9FVX0PhylomeDB:Q9FVX0PIR:A96803PRIDE:Q9FVX0
PRO:PR:Q9FVX0PROSITE:PS00292ProteinModelPortal:Q9FVX0Proteomes:UP000006548
Reactome:R-ATH-113510Reactome:R-ATH-1538133Reactome:R-ATH-174184Reactome:R-ATH-68911
Reactome:R-ATH-68949Reactome:R-ATH-69205Reactome:R-ATH-69273Reactome:R-ATH-69656
RefSeq:NP_177863.2scanprosite:PS00292SMART:SM00385SMART:SM01332
SMR:Q9FVX0STRING:3702.AT1G77390.1SUPFAM:SSF47954TAIR:AT1G77390
tair10-symbols:CYCA1tair10-symbols:CYCA1;2tair10-symbols:DYPtair10-symbols:TAM
UniGene:At.52546UniProt:Q9FVX0
Coordinates (TAIR10) chr1:-:29081904..29084137
Molecular Weight (calculated) 49640.00 Da
IEP (calculated) 5.72
GRAVY (calculated) -0.37
Length 442 amino acids
Sequence (TAIR10)
(BLAST)
001: MSSSSRNLSQ ENPIPRPNLA KTRTSLRDVG NRRAPLGDIT NQKNGSRNPS PSSTLVNCSN KIGQSKKAPK PALSRNWNLG ILDSGLPPKP NAKSNIIVPY
101: EDTELLQSDD SLLCSSPALS LDASPTQSDP SISTHDSLTN HVVDYMVEST TDDGNDDDDD EIVNIDSDLM DPQLCASFAC DIYEHLRVSE VNKRPALDYM
201: ERTQSSINAS MRSILIDWLV EVAEEYRLSP ETLYLAVNYV DRYLTGNAIN KQNLQLLGVT CMMIAAKYEE VCVPQVEDFC YITDNTYLRN ELLEMESSVL
301: NYLKFELTTP TAKCFLRRFL RAAQGRKEVP SLLSECLACY LTELSLLDYA MLRYAPSLVA ASAVFLAQYT LHPSRKPWNA TLEHYTSYRA KHMEACVKNL
401: LQLCNEKLSS DVVAIRKKYS QHKYKFAAKK LCPTSLPQEL FL
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)