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AT3G53310.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 1.000
ASURE: nucleus
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : AP2/B3-like transcriptional factor family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
AP2/B3-like transcriptional factor family protein; FUNCTIONS IN: DNA binding, sequence-specific DNA binding transcription factor activity; INVOLVED IN: regulation of transcription, DNA-dependent; LOCATED IN: endomembrane system; EXPRESSED IN: 15 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Transcriptional factor B3 (InterPro:IPR003340); BEST Arabidopsis thaliana protein match is: AP2/B3-like transcriptional factor family protein (TAIR:AT3G06160.2); Has 6284 Blast hits to 2802 proteins in 274 species: Archae - 3; Bacteria - 1667; Metazoa - 1559; Fungi - 645; Plants - 847; Viruses - 128; Other Eukaryotes - 1435 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410JJ8VeggNOG:ENOG41119ZMEMBL:AB493647EMBL:AL132966
EMBL:AY087586EMBL:BT025724EMBL:CP002686EnsemblPlants:AT3G53310
EnsemblPlants:AT3G53310.1entrez:824499Gene3D:2.40.330.10GeneID:824499
Genevisible:Q8LAV5GO:GO:0003677GO:GO:0005634GO:GO:0006351
GO:GO:0006355Gramene:AT3G53310.1hmmpanther:PTHR31920hmmpanther:PTHR31920:SF15
HOGENOM:HOG000097078InParanoid:Q8LAV5InterPro:IPR003340InterPro:IPR015300
KEGG:ath:AT3G53310OMA:VECELLHPaxDb:Q8LAV5Pfam:PF02362
Pfam:Q8LAV5Pfscan:PS50863PhylomeDB:Q8LAV5PIR:T45871
PRIDE:Q8LAV5PRO:PR:Q8LAV5PROSITE:PS50863ProteinModelPortal:Q8LAV5
Proteomes:UP000006548RefSeq:NP_566984.1SMART:SM01019SMR:Q8LAV5
STRING:3702.AT3G53310.1SUPFAM:SSF101936TAIR:AT3G53310UniGene:At.47486
UniProt:Q8LAV5
Coordinates (TAIR10) chr3:-:19766927..19768368
Molecular Weight (calculated) 32620.00 Da
IEP (calculated) 4.27
GRAVY (calculated) -0.55
Length 286 amino acids
Sequence (TAIR10)
(BLAST)
001: MADDSELYPR FFKVFLVESA SESLMIPLPF MAFLADPLPK TVKLQGLGGK LWTVSLKKIS GAAYLTRGWP KFAEEHELKN GEFMTFVYDG HRTFEVSVFD
101: RWGSKEVRAE IQAIPLSDSD SDSVVEDEKD STDVVEDDDD EDEDEDEDDD GSFDEDEEIS QSLYPIDEET ATDAAVFEGN LDVEALTNPH FPTTLKNRIY
201: ELLIPANVVK DNNLEFGSSI KYIDGEGTLV GLRGKWADKR VCFKGWDRIC RRNRLKKHQD TVECELLHDD QKMVHSIRVH VLRRDA
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)