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AT1G14790.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

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SUBAcon:
plasma membrane 0.814
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : RNA-dependent RNA polymerase 1
Curator
Summary (TAIR10)
Encodes RNA-dependent RNA polymerase. While not required for virus-induced post-transcriptional gene silencing (PTGS), it can promote turnover of viral RNAs in infected plants. Nomenclature according to Xie, et al. (2004). Involved in the production of Cucumber Mosaic Virus siRNAs.
Computational
Description (TAIR10)
RNA-dependent RNA polymerase 1 (RDR1); CONTAINS InterPro DOMAIN/s: RNA-dependent RNA polymerase, eukaryotic-type (InterPro:IPR007855); BEST Arabidopsis thaliana protein match is: RNA-dependent RNA polymerase 2 (TAIR:AT4G11130.1); Has 638 Blast hits to 623 proteins in 115 species: Archae - 0; Bacteria - 2; Metazoa - 73; Fungi - 286; Plants - 205; Viruses - 2; Other Eukaryotes - 70 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:AT1G14790-MONOMERBRENDA:2.7.7.48EC:2.7.7.48eggNOG:ENOG410XQMQ
eggNOG:KOG0988EMBL:AC006917EMBL:AJ011977EMBL:AK228731
EMBL:AY148431EMBL:CP002684EnsemblPlants:AT1G14790EnsemblPlants:AT1G14790.1
entrez:838044GeneID:838044Genevisible:Q9LQV2GO:GO:0000166
GO:GO:0003723GO:GO:0003968GO:GO:0006952GO:GO:0009615
GO:GO:0009751GO:GO:0010025GO:GO:0030422GO:GO:0060148
Gramene:AT1G14790.1hmmpanther:PTHR23079hmmpanther:PTHR23079:SF9HOGENOM:HOG000239464
InParanoid:Q9LQV2InterPro:IPR007855InterPro:IPR012677iPTMnet:Q9LQV2
KEGG:ath:AT1G14790KO:K11699OMA:EVAMKCNPANTHER:PTHR23079
PaxDb:Q9LQV2Pfam:PF05183Pfam:Q9LQV2PhylomeDB:Q9LQV2
PRIDE:Q9LQV2PRO:PR:Q9LQV2ProteinModelPortal:Q9LQV2Proteomes:UP000006548
RefSeq:NP_172932.1SMR:Q9LQV2STRING:3702.AT1G14790.1SUPFAM:SSF54928
TAIR:AT1G14790tair10-symbols:ATRDRP1tair10-symbols:RDR1UniGene:At.27823
UniGene:At.70434UniProt:Q9LQV2
Coordinates (TAIR10) chr1:-:5094317..5097817
Molecular Weight (calculated) 126221.00 Da
IEP (calculated) 7.88
GRAVY (calculated) -0.30
Length 1107 amino acids
Sequence (TAIR10)
(BLAST)
0001: MGKTIQVFGF PNGVSAEEVK KFLERLTGSG TVYAIKVRQP KKGGPRVYAI VQFTSERHTR LIITAAAERL YYGRSYLKAF EVEQDIVPKP RASLHTISGL
0101: KMFFGCQVST KKFLTLWSAQ DVCVSFGIGM RKLHFSFSWY QKDYRLELSY ENIWQIDLHS PQGRSSKFLV IQVIGAPKIF EKEDQPINLL FGIMDFYSDG
0201: SDEQWIRTTD FTSSSCIGQS TAFCLELPVH LNVPDFRENF ANYAEHRASS FLIESGSSYS SNANTLVPVV DPPPGFSLPF EILFKLNTLV QNACLSGPAL
0301: DLDFYRLLNQ KKYDRALIDH CLEKLFHLGE CCYEPAHWLR DEYKKWISKG KLPLSPTISL DDGLVYMYRV QVTPARVYFS GPEVNVSNRV LRHYSKYINN
0401: FLRVSFVDED LEKVRSMDLS PRSSTQRRTK LYDRIYSVLR DGIVIGDKKF EFLAFSSSQL RENSAWMFAP IDRITAAHIR AWMGDFDHIR NVAKYAARLG
0501: QSFSSSRETL NVRSDEIEVI PDVEIISLGT RYVFSDGIGK ISAEFARKVA RKCGLTEFSP SAFQIRYGGY KGVVAVDPNS SKKLSLRKSM SKFESENTKL
0601: DVLAWSKYQP CYMNRQLITL LSTLGVTDSV FEKKQREVVD RLDAILTHPL EAHEALGLMA PGENTNILKA LILCGYKPDA EPFLSMMLQN FRASKLLELR
0701: TKTRIFISGG RSMMGCLDET RTLEYGQVVV QYSDPMRPGR RFIITGPVVV AKNPCLHPGD VRVLQAVNVP ALNHMVDCVV FPQKGLRPHP NECSGSDLDG
0801: DIYFVCWDQE LVPPRTSEPM DYTPEPTQIL DHDVTIEEVE EYFANYIVND SLGIIANAHT AFADKEPLKA FSDPCIELAK KFSTAVDFPK TGVAAVIPQH
0901: LYVKEYPDFM EKPDKPTYES KNVIGKLFRE VKERAPPLIS IKSFTLDVAS KSYDKDMEVD GFEEYVDEAF YQKANYDFKL GNLMDYYGIK TEAEILSGGI
1001: MRMSKSFTKR RDAESIGRAV RALRKETLSL FNASEEEENE SAKASAWYHV TYHSSYWGLY NEGLNRDHFL SFAWCVYDKL VRIKKTNLGR RQRQETLERL
1101: DHVLRFG
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)