AT1G72010.1
Subcellular Consensus
(Prediction and Experimental) min: :max .
SUBAcon:nucleus 1.000 ASURE: nucleus What is SUBAcon? |
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Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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Description (TAIR10) | protein_coding : TCP family transcription factor | ||||||||||||||||||||||||||||||||||||||||||||
Curator Summary (TAIR10) |
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Computational Description (TAIR10) |
TCP family transcription factor ; FUNCTIONS IN: sequence-specific DNA binding transcription factor activity; INVOLVED IN: regulation of transcription; LOCATED IN: chloroplast; CONTAINS InterPro DOMAIN/s: Transcription factor, TCP (InterPro:IPR005333), Transcription factor TCP subgroup (InterPro:IPR017887); BEST Arabidopsis thaliana protein match is: TCP family transcription factor (TAIR:AT1G35560.1); Has 492 Blast hits to 490 proteins in 74 species: Archae - 0; Bacteria - 8; Metazoa - 7; Fungi - 7; Plants - 465; Viruses - 0; Other Eukaryotes - 5 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||
Protein Annotations |
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Coordinates (TAIR10) | chr1:+:27107844..27108971 | ||||||||||||||||||||||||||||||||||||||||||||
Molecular Weight (calculated) | 39601.20 Da | ||||||||||||||||||||||||||||||||||||||||||||
IEP (calculated) | 8.98 | ||||||||||||||||||||||||||||||||||||||||||||
GRAVY (calculated) | -0.59 | ||||||||||||||||||||||||||||||||||||||||||||
Length | 375 amino acids | ||||||||||||||||||||||||||||||||||||||||||||
Sequence (TAIR10) (BLAST) |
001: MNQNSSVAEA TLQLNSGEKP SPGSIPFISS GQHGNISTSA TSSTSTSSGS ALAVVKSAVK KPTKDRHTKV DGRGRRIRMP AMCAARVFQL TRELGHKSDG 101: ETIEWLLQQA EPAIIASTGT GTIPANFSTL NASLRSGGGS TLFSQASKSS SSPLSFHSTG MSLYEDNNGT NGSSVDPSRK LLNSAANAAV FGFHHQMYPP 201: IMSTERNPNT LVKPYREDYF KEPSSAAEPS ESSQKASQFQ EQELAQGRGT ANVVPQPMWA VAPGTTNGGS AFWMLPMSGS GGREQMQQQP GHQMWAFNPG 301: NYPVGTGRVV TAPMGSMMLG GQQLGLGVAE GNMAAAMRGS RGDGLAMTLD QHQHQLQHQE PNQSQASENG GDDKK |
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See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)