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AT1G72010.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 1.000
ASURE: nucleus
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:28865150 (2017): extracellular region plant-type cell wall
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : TCP family transcription factor
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
TCP family transcription factor ; FUNCTIONS IN: sequence-specific DNA binding transcription factor activity; INVOLVED IN: regulation of transcription; LOCATED IN: chloroplast; CONTAINS InterPro DOMAIN/s: Transcription factor, TCP (InterPro:IPR005333), Transcription factor TCP subgroup (InterPro:IPR017887); BEST Arabidopsis thaliana protein match is: TCP family transcription factor (TAIR:AT1G35560.1); Has 492 Blast hits to 490 proteins in 74 species: Archae - 0; Bacteria - 8; Metazoa - 7; Fungi - 7; Plants - 465; Viruses - 0; Other Eukaryotes - 5 (source: NCBI BLink).
Protein Annotations
BioGrid:28752eggNOG:ENOG410JB3ZeggNOG:ENOG4111CI8EMBL:AC069273
EMBL:AY080776EMBL:AY150488EMBL:CP002684EnsemblPlants:AT1G72010
EnsemblPlants:AT1G72010.1entrez:843532GeneID:843532GO:GO:0003677
GO:GO:0003700GO:GO:0005634GO:GO:0006351GO:GO:0006355
Gramene:AT1G72010.1hmmpanther:PTHR31072hmmpanther:PTHR31072:SF21HOGENOM:HOG000110300
InParanoid:Q9C7G4InterPro:IPR005333InterPro:IPR017887KEGG:ath:AT1G72010
OMA:KPYREDYPaxDb:Q9C7G4Pfam:PF03634Pfam:Q9C7G4
Pfscan:PS51369PhylomeDB:Q9C7G4PIR:B96743PRIDE:Q9C7G4
PRO:PR:Q9C7G4PROSITE:PS51369ProteinModelPortal:Q9C7G4Proteomes:UP000006548
RefSeq:NP_177346.1STRING:3702.AT1G72010.1TAIR:AT1G72010UniGene:At.23095
UniGene:At.71521UniProt:Q9C7G4
Coordinates (TAIR10) chr1:+:27107844..27108971
Molecular Weight (calculated) 39601.20 Da
IEP (calculated) 8.98
GRAVY (calculated) -0.59
Length 375 amino acids
Sequence (TAIR10)
(BLAST)
001: MNQNSSVAEA TLQLNSGEKP SPGSIPFISS GQHGNISTSA TSSTSTSSGS ALAVVKSAVK KPTKDRHTKV DGRGRRIRMP AMCAARVFQL TRELGHKSDG
101: ETIEWLLQQA EPAIIASTGT GTIPANFSTL NASLRSGGGS TLFSQASKSS SSPLSFHSTG MSLYEDNNGT NGSSVDPSRK LLNSAANAAV FGFHHQMYPP
201: IMSTERNPNT LVKPYREDYF KEPSSAAEPS ESSQKASQFQ EQELAQGRGT ANVVPQPMWA VAPGTTNGGS AFWMLPMSGS GGREQMQQQP GHQMWAFNPG
301: NYPVGTGRVV TAPMGSMMLG GQQLGLGVAE GNMAAAMRGS RGDGLAMTLD QHQHQLQHQE PNQSQASENG GDDKK
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)