AT4G34920.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:cytosol 0.999 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : PLC-like phosphodiesterases superfamily protein | ||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
PLC-like phosphodiesterases superfamily protein; FUNCTIONS IN: phospholipase C activity, phosphoric diester hydrolase activity; INVOLVED IN: triglyceride biosynthetic process, intracellular signaling pathway, lipid metabolic process, phospholipid biosynthetic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: male gametophyte, pollen tube; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage; CONTAINS InterPro DOMAIN/s: Phospholipase C, phosphatidylinositol-specific , X domain (InterPro:IPR000909), PLC-like phosphodiesterase, TIM beta/alpha-barrel domain (InterPro:IPR017946); BEST Arabidopsis thaliana protein match is: PLC-like phosphodiesterases superfamily protein (TAIR:AT4G34930.1); Has 709 Blast hits to 707 proteins in 190 species: Archae - 0; Bacteria - 444; Metazoa - 112; Fungi - 67; Plants - 54; Viruses - 0; Other Eukaryotes - 32 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr4:+:16635745..16636701 | ||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 36402.30 Da | ||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 5.89 | ||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.42 | ||||||||||||||||||||||||||||||||||||
| Length | 318 amino acids | ||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MLSFFSNQID RQKDVSNEEK TLTNLEKSDG SQFPGDDYRP SDRKNWMAGL TLEKLTLNKI VWPGTHDSAT NDIGIPLISR PLAECQSLSI YEQLVLGTRV 101: LDIRVQEDRQ ICHGILTSYE IDVVIDDVIR FLSETHSEIV ILEIRTEFGH KDPPGFETYL ADKLGQFLIH QDDSLFNKPV SEILPKRVIC IWKPRESPKP 201: SRGGILWNSD YLKDNWIDTD LPWTKFQSNL KHLSEQQPTS SRKFFYRVEN TVTPQADNPV VWVKPVTDRI RKHARLFISQ CVSKGCGDKL QILSTDFIEG 301: DFVDACVGLT HARIEGKV |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)