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AT3G19490.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
plastid 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : sodium:hydrogen antiporter 1
Curator
Summary (TAIR10)
member of Na+/H+ antiporter-Putative family
Computational
Description (TAIR10)
sodium:hydrogen antiporter 1 (NHD1); FUNCTIONS IN: potassium:hydrogen antiporter activity, sodium:hydrogen antiporter activity; INVOLVED IN: sodium ion transport; LOCATED IN: integral to membrane, chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Na+/H+ antiporter NhaD-like (InterPro:IPR018390), Divalent ion symporter (InterPro:IPR004680); BEST Arabidopsis thaliana protein match is: Na+/H+ antiporter 2 (TAIR:AT1G49810.1); Has 2659 Blast hits to 2653 proteins in 794 species: Archae - 96; Bacteria - 1787; Metazoa - 39; Fungi - 48; Plants - 76; Viruses - 0; Other Eukaryotes - 613 (source: NCBI BLink).
Protein Annotations
eggNOG:COG1055eggNOG:ENOG410IF4IEMBL:AB025624EMBL:AY084922
EMBL:CP002686EnsemblPlants:AT3G19490EnsemblPlants:AT3G19490.1entrez:821483
GeneID:821483GO:GO:0006848GO:GO:0016021GO:GO:0050833
GO:GO:1901475Gramene:AT3G19490.1hmmpanther:PTHR10283hmmpanther:PTHR10283:SF103
HOGENOM:HOG000251774InterPro:IPR004680KEGG:ath:AT3G19490OMA:WKLIAYA
Pfam:PF03600PhylomeDB:Q9LT68Proteomes:UP000006548RefSeq:NP_566638.1
STRING:3702.AT3G19490.1TAIR:AT3G19490tair10-symbols:ATNHD1tair10-symbols:NHD1
TMHMM:TMhelixUniGene:At.46279UniGene:At.68436UniProt:Q9LT68
Coordinates (TAIR10) chr3:-:6754875..6758127
Molecular Weight (calculated) 61372.00 Da
IEP (calculated) 5.59
GRAVY (calculated) 0.53
Length 576 amino acids
Sequence (TAIR10)
(BLAST)
001: MAVFPIGSHF APPHQLTKRH VIATSSPISI STRLPQNVSF SKVSGVTGST RLSKHGVLVR AEDKIRSSSS PSSLDEPIDE DLMDSSGLCD PLCSVDEPSS
101: SYFEANYQPK TDIIKALAIL AAALTGTAAI NHSWVAANQD VAMALLFGIG YAGIIFEESL AFNKSGIGLL MAVSLWVVRS IGAPSTEIAV LDLQHATAEV
201: SEIVFFLLGA MTIVEIVDAH QGFKLVTDNI TTRKPKTLLW VVGFVTFFLS SILDNLTSTI VMVSLIRKLV PQSEYRKLLG GVVVIAANAG GAWTPIGDVT
301: TTMLWIHGQI STLPTMKDLF LPSVVSLAVP LALMSLTSEV NGKEQDPKDV LASEKMAPRG KLVFGVGLGA LVFVPVFKAL TGLPPYMGIL LGLGVLWILT
401: DAIHYGESER QKLKVPQALS RIDTQGALFF LGILLSVSSL EAAGILREIA NYLDANIPNV ELIASAIGVV SAIIDNVPLV AATMGMYDLT SFPQDSEFWQ
501: LIAFCAGTGG SMLVIGSAAG VAFMGMEKVD FFWYFRKVSG FAFAGYAAGI AAYLAVHNLH FEIPTTVAQI PFLTGS
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)