AT1G80010.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : FAR1-related sequence 8 | ||||||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
FAR1-related sequence 8 (FRS8); FUNCTIONS IN: zinc ion binding; INVOLVED IN: response to red or far red light; LOCATED IN: cellular_component unknown; EXPRESSED IN: 11 plant structures; EXPRESSED DURING: 4 anthesis, F mature embryo stage, petal differentiation and expansion stage, E expanded cotyledon stage, D bilateral stage; CONTAINS InterPro DOMAIN/s: MULE transposase, conserved domain (InterPro:IPR018289), Transcription factor, FAR1-related (InterPro:IPR004330), Zinc finger, PMZ-type (InterPro:IPR006564), Zinc finger, SWIM-type (InterPro:IPR007527); BEST Arabidopsis thaliana protein match is: FAR1-related sequence 6 (TAIR:AT1G52520.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr1:+:30097565..30099846 | ||||||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 82567.90 Da | ||||||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 6.23 | ||||||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.35 | ||||||||||||||||||||||||||||||||||||||||||||||||
| Length | 725 amino acids | ||||||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MIGNSVYISP SPSPSDHSLS PNPNLCISAM EEQLVVDDDD DDLAPPPIPD LDIDLEDDDD ACCHGLLHIA PNHEEETGCD ENAFANEKCL MAPPPTPGME 101: FESYDDAYSF YNSYARELGF AIRVKSSWTK RNSKEKRGAV LCCNCQGFKL LKDAHSRRKE TRTGCQAMIR LRLIHFDRWK VDQVKLDHNH SFDPQRAHNS 201: KSHKKSSSSA SPATKTNPEP PPHVQVRTIK LYRTLALDTP PALGTSLSSG ETSDLSLDHF QSSRRLELRG GFRALQDFFF QIQLSSPNFL YLMDLADDGS 301: LRNVFWIDAR ARAAYSHFGD VLLFDTTCLS NAYELPLVAF VGINHHGDTI LLGCGLLADQ SFETYVWLFR AWLTCMLGRP PQIFITEQCK AMRTAVSEVF 401: PRAHHRLSLT HVLHNICQSV VQLQDSDLFP MALNRVVYGC LKVEEFETAW EEMIIRFGMT NNETIRDMFQ DRELWAPVYL KDTFLAGALT FPLGNVAAPF 501: IFSGYVHENT SLREFLEGYE SFLDKKYTRE ALCDSESLKL IPKLKTTHPY ESQMAKVFTM EIFRRFQDEV SAMSSCFGVT QVHSNGSASS YVVKEREGDK 601: VRDFEVIYET SAAAQVRCFC VCGGFSFNGY QCRHVLLLLS HNGLQEVPPQ YILQRWRKDV KRLYVAEFGS GRVDIMNPDQ WYEHLHRRAM QVVEQGMRSK 701: EHCRAAWEAF RECANKVQFV TEKPS |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)