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AT1G80010.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
nucleus 0.998
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : FAR1-related sequence 8
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
FAR1-related sequence 8 (FRS8); FUNCTIONS IN: zinc ion binding; INVOLVED IN: response to red or far red light; LOCATED IN: cellular_component unknown; EXPRESSED IN: 11 plant structures; EXPRESSED DURING: 4 anthesis, F mature embryo stage, petal differentiation and expansion stage, E expanded cotyledon stage, D bilateral stage; CONTAINS InterPro DOMAIN/s: MULE transposase, conserved domain (InterPro:IPR018289), Transcription factor, FAR1-related (InterPro:IPR004330), Zinc finger, PMZ-type (InterPro:IPR006564), Zinc finger, SWIM-type (InterPro:IPR007527); BEST Arabidopsis thaliana protein match is: FAR1-related sequence 6 (TAIR:AT1G52520.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410IHQ1eggNOG:ENOG410Y5UHEMBL:AC009322EMBL:AC011717EMBL:CP002684EnsemblPlants:AT1G80010EnsemblPlants:AT1G80010.1
entrez:844341GeneID:844341Genevisible:Q9S793GO:GO:0005634GO:GO:0006355GO:GO:0008270Gramene:AT1G80010.1
hmmpanther:PTHR31669hmmpanther:PTHR31669:SF4HOGENOM:HOG000112651InParanoid:Q9S793InterPro:IPR004330InterPro:IPR006564InterPro:IPR007527
InterPro:IPR018289InterPro:IPR031052KEGG:ath:AT1G80010KO:K17604OMA:HNHALNPPANTHER:PTHR31669PaxDb:Q9S793
Pfam:PF03101Pfam:PF04434Pfam:PF10551Pfam:Q9S793Pfscan:PS50966PIR:E96831PRIDE:Q9S793
PRO:PR:Q9S793PROSITE:PS50966ProteinModelPortal:Q9S793Proteomes:UP000006548RefSeq:NP_178118.2SMART:SM00575STRING:3702.AT1G80010.1
TAIR:AT1G80010tair10-symbols:FRS8UniGene:At.52575UniProt:Q9S793
Coordinates (TAIR10) chr1:+:30097565..30099846
Molecular Weight (calculated) 82567.90 Da
IEP (calculated) 6.23
GRAVY (calculated) -0.35
Length 725 amino acids
Sequence (TAIR10)
(BLAST)
001: MIGNSVYISP SPSPSDHSLS PNPNLCISAM EEQLVVDDDD DDLAPPPIPD LDIDLEDDDD ACCHGLLHIA PNHEEETGCD ENAFANEKCL MAPPPTPGME
101: FESYDDAYSF YNSYARELGF AIRVKSSWTK RNSKEKRGAV LCCNCQGFKL LKDAHSRRKE TRTGCQAMIR LRLIHFDRWK VDQVKLDHNH SFDPQRAHNS
201: KSHKKSSSSA SPATKTNPEP PPHVQVRTIK LYRTLALDTP PALGTSLSSG ETSDLSLDHF QSSRRLELRG GFRALQDFFF QIQLSSPNFL YLMDLADDGS
301: LRNVFWIDAR ARAAYSHFGD VLLFDTTCLS NAYELPLVAF VGINHHGDTI LLGCGLLADQ SFETYVWLFR AWLTCMLGRP PQIFITEQCK AMRTAVSEVF
401: PRAHHRLSLT HVLHNICQSV VQLQDSDLFP MALNRVVYGC LKVEEFETAW EEMIIRFGMT NNETIRDMFQ DRELWAPVYL KDTFLAGALT FPLGNVAAPF
501: IFSGYVHENT SLREFLEGYE SFLDKKYTRE ALCDSESLKL IPKLKTTHPY ESQMAKVFTM EIFRRFQDEV SAMSSCFGVT QVHSNGSASS YVVKEREGDK
601: VRDFEVIYET SAAAQVRCFC VCGGFSFNGY QCRHVLLLLS HNGLQEVPPQ YILQRWRKDV KRLYVAEFGS GRVDIMNPDQ WYEHLHRRAM QVVEQGMRSK
701: EHCRAAWEAF RECANKVQFV TEKPS
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)