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AT1G68050.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
nucleus 0.998
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no coexpression data
Description (TAIR10) protein_coding : flavin-binding, kelch repeat, f box 1
Curator
Summary (TAIR10)
Encodes FKF1, a flavin-binding kelch repeat F box protein, is clock-controlled, regulates transition to flowering. Forms a complex with GI on the CO promoter to regulate CO expression.
Computational
Description (TAIR10)
flavin-binding, kelch repeat, f box 1 (FKF1); FUNCTIONS IN: ubiquitin-protein ligase activity, signal transducer activity; INVOLVED IN: response to blue light, positive regulation of flower development, circadian rhythm, ubiquitin-dependent protein catabolic process, regulation of transcription; LOCATED IN: cellular_component unknown; EXPRESSED IN: whole plant, root tip, male gametophyte, leaf, pollen tube; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage; CONTAINS InterPro DOMAIN/s: PAC motif (InterPro:IPR001610), Galactose oxidase/kelch, beta-propeller (InterPro:IPR011043), Kelch repeat type 1 (InterPro:IPR006652), PAS fold (InterPro:IPR013767), PAS (InterPro:IPR000014), Kelch repeat type 2 (InterPro:IPR011498), F-box domain, Skp2-like (InterPro:IPR022364), Kelch-type beta propeller (InterPro:IPR015915); BEST Arabidopsis thaliana protein match is: Galactose oxidase/kelch repeat superfamily protein (TAIR:AT5G57360.1); Has 8646 Blast hits to 5789 proteins in 832 species: Archae - 91; Bacteria - 2197; Metazoa - 2116; Fungi - 922; Plants - 2047; Viruses - 0; Other Eukaryotes - 1273 (source: NCBI BLink).
Protein Annotations
BioGrid:28354DIP:DIP-31333NeggNOG:ENOG410IKJWeggNOG:ENOG410XRGEEMBL:AC012563EMBL:AF216523EMBL:AF252296
EMBL:AY064999EMBL:AY113029EMBL:CP002684EnsemblPlants:AT1G68050EnsemblPlants:AT1G68050.1entrez:843133Gene3D:2.120.10.80
GeneID:843133Genevisible:Q9C9W9GO:GO:0001047GO:GO:0005634GO:GO:0005737GO:GO:0006355GO:GO:0007623
GO:GO:0009637GO:GO:0009881GO:GO:0009908GO:GO:0009911GO:GO:0010468GO:GO:0016567GO:GO:0018298
Gramene:AT1G68050.1hmmpanther:PTHR23244hmmpanther:PTHR23244:SF263HOGENOM:HOG000238789InParanoid:Q9C9W9IntAct:Q9C9W9InterPro:IPR000014
InterPro:IPR001610InterPro:IPR001810InterPro:IPR011498InterPro:IPR015915iPTMnet:Q9C9W9KEGG:ath:AT1G68050KO:K12116
OMA:YPVYKQQPaxDb:Q9C9W9Pfam:PF07646Pfam:PF13415Pfam:PF13418Pfam:PF13426Pfam:Q9C9W9
Pfscan:PS50112PhylomeDB:Q9C9W9PIR:F96703PRIDE:Q9C9W9PRO:PR:Q9C9W9PROSITE:PS50112ProteinModelPortal:Q9C9W9
Proteomes:UP000006548RefSeq:NP_564919.1SMART:SM00086SMR:Q9C9W9STRING:3702.AT1G68050.1SUPFAM:0052715SUPFAM:SSF55785
SUPFAM:SSF81383TAIR:AT1G68050tair10-symbols:ADO3tair10-symbols:FKF1TIGRfam:TIGR00229TIGRFAMs:TIGR00229UniGene:At.20568
UniPathway:UPA00143UniProt:Q9C9W9
Coordinates (TAIR10) chr1:+:25508737..25510697
Molecular Weight (calculated) 69066.90 Da
IEP (calculated) 6.46
GRAVY (calculated) -0.24
Length 619 amino acids
Sequence (TAIR10)
(BLAST)
001: MAREHAIGEA TGKRKKRGRV EEAEEYCNDG IEEQVEDEKL PLEVGMFYYP MTPPSFIVSD ALEPDFPLIY VNRVFEVFTG YRADEVLGRN CRFLQYRDPR
101: AQRRHPLVDP VVVSEIRRCL EEGIEFQGEL LNFRKDGTPL VNRLRLAPIR DDDGTITHVI GIQVFSETTI DLDRVSYPVF KHKQQLDQTS ECLFPSGSPR
201: FKEHHEDFCG ILQLSDEVLA HNILSRLTPR DVASIGSACR RLRQLTKNES VRKMVCQNAW GKEITGTLEI MTKKLRWGRL ARELTTLEAV CWRKFTVGGI
301: VQPSRCNFSA CAVGNRLVLF GGEGVNMQPL DDTFVLNLDA ECPEWQRVRV TSSPPGRWGH TLSCLNGSWL VVFGGCGRQG LLNDVFVLDL DAKHPTWKEV
401: AGGTPPLPRS WHSSCTIEGS KLVVSGGCTD AGVLLSDTFL LDLTTDKPTW KEIPTSWAPP SRLGHSLSVF GRTKILMFGG LANSGHLKLR SGEAYTIDLE
501: DEEPRWRELE CSAFPGVVVP PPRLDHVAVS MPCGRVIIFG GSIAGLHSPS QLFLIDPAEE KPSWRILNVP GKPPKLAWGH STCVVGGTRV LVLGGHTGEE
601: WILNELHELC LASRQDSDL
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)