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AT1G60940.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
cytosol 0.995
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:31818904 (2020): mitochondrion
  • PMID:25900983 (2015): Golgi
  • PMID:25900983 (2015): Golgi Golgi apparatus Golgi membrane
  • PMID:25900983 (2015): Golgi trans-Golgi network
  • PMID:25900983 (2015): Golgi trans-Golgi network early endosome
  • PMID:25900983 (2015): Golgi trans-Golgi network multivesicular body
  • PMID:25900983 (2015): plant-type vacuole plant-type vacuole membrane
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : SNF1-related protein kinase 2.10
Curator
Summary (TAIR10)
encodes a member of SNF1-related protein kinases (SnRK2) whose activity is activated by ionic (salt) and non-ionic (mannitol) osmotic stress.
Computational
Description (TAIR10)
SNF1-related protein kinase 2.10 (SNRK2.10); CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Serine/threonine-protein kinase domain (InterPro:IPR002290), Serine/threonine-protein kinase-like domain (InterPro:IPR017442), Protein kinase-like domain (InterPro:IPR011009), Serine/threonine-protein kinase, active site (InterPro:IPR008271), Protein kinase, catalytic domain (InterPro:IPR000719), Calcium/calmodulin-dependent protein kinase-like (InterPro:IPR020636), Serine/threonine-protein kinase-like, plant (InterPro:IPR015740); BEST Arabidopsis thaliana protein match is: Protein kinase superfamily protein (TAIR:AT1G10940.1); Has 111565 Blast hits to 109717 proteins in 3008 species: Archae - 112; Bacteria - 13169; Metazoa - 40737; Fungi - 12092; Plants - 25831; Viruses - 494; Other Eukaryotes - 19130 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:AT1G60940-MONOMERBioCyc:ARA:GQT-1619-MONOMERBioGrid:27609EC:2.7.11.1
eggNOG:COG0515eggNOG:KOG0583EMBL:AC018908EMBL:AY072340
EMBL:AY088802EMBL:BT002546EMBL:CP002684EnsemblPlants:AT1G60940
EnsemblPlants:AT1G60940.1EnsemblPlants:AT1G60940.2entrez:842385GeneID:842385
Genevisible:Q9C958GO:GO:0004672GO:GO:0004674GO:GO:0005524
GO:GO:0005829GO:GO:0006970GO:GO:0009651GO:GO:0016301
GO:GO:0035556GO:GO:0048527GO:GO:0070300Gramene:AT1G60940.1
Gramene:AT1G60940.2hmmpanther:PTHR24343hmmpanther:PTHR24343:SF101HOGENOM:HOG000233016
InParanoid:Q9C958IntAct:Q9C958InterPro:IPR000719InterPro:IPR008271
InterPro:IPR011009InterPro:IPR017441iPTMnet:Q9C958KEGG:ath:AT1G60940
KO:K14498ncoils:CoilOMA:VSQDCKEPaxDb:Q9C958
Pfam:PF00069Pfam:Q9C958Pfscan:PS50011PhylomeDB:Q9C958
PIR:H96634PRIDE:Q9C958PRO:PR:Q9C958PROSITE:PS00107
PROSITE:PS00108PROSITE:PS50011ProteinModelPortal:Q9C958Proteomes:UP000006548
Reactome:R-ATH-163680Reactome:R-ATH-200425Reactome:R-ATH-380972RefSeq:NP_176290.1
RefSeq:NP_849834.1scanprosite:PS00107scanprosite:PS00108SMART:SM00220
SMR:Q9C958STRING:3702.AT1G60940.1SUPFAM:SSF56112TAIR:AT1G60940
tair10-symbols:SNRK2-10tair10-symbols:SNRK2.10tair10-symbols:SRK2BUniGene:At.25609
UniProt:Q9C958
Coordinates (TAIR10) chr1:-:22439398..22441896
Molecular Weight (calculated) 41042.10 Da
IEP (calculated) 5.68
GRAVY (calculated) -0.44
Length 361 amino acids
Sequence (TAIR10)
(BLAST)
001: MDKYELVKDI GAGNFGVARL MRVKNSKELV AMKYIERGPK IDENVAREII NHRSLRHPNI IRFKEVVLTP THIAIAMEYA AGGELFERIC SAGRFSEDEA
101: RYFFQQLISG VSYCHAMQIC HRDLKLENTL LDGSPAPRLK ICDFGYSKSS LLHSMPKSTV GTPAYIAPEV LSRGEYDGKM ADVWSCGVTL YVMLVGAYPF
201: EDQEDPKNFK KTIQRIMAVK YKIPDYVHIS QDCKHLLSRI FVTNSNKRIT IGDIKKHPWF LKNLPRELTE IAQAAYFRKE NPTFSLQSVE EIMKIVEEAK
301: TPARVSRSIG AFGWGGGEDA EGKEEDAEEE VEEVEEEEDE EDEYDKTVKQ VHASMGEVRV S
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)