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AT2G26670.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
plastid 1.000
ASURE: plastid
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:31186290 (2019): plastid plastid stroma
  • PMID:30962257 (2019): plastid
  • PMID:30783145 (2019): extracellular region plant-type cell wall
  • PMID:30394608 (2019): plastid
  • PMID:28865150 (2017): extracellular region plant-type cell wall
  • PMID:27137770 (2016): plastid plastid stroma
  • PMID:24361574 (2014): plastid plastid stroma
  • PMID:24124904 (2013): plastid
  • PMID:21531424 (2011): plastid
  • PMID:20423899 (2010): plastid
  • PMID:20061580 (2010): plastid plastid stroma
  • PMID:18431481 (2008): plastid
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Plant haem oxygenase (decyclizing) family protein
Curator
Summary (TAIR10)
Encodes a plastid heme oxygenase necessary for phytochrome chromophore biosynthesis and for coupling the expression of some nuclear genes to the functional state of the chloroplast.
Computational
Description (TAIR10)
REVERSAL OF THE DET PHENOTYPE 4 (TED4); FUNCTIONS IN: heme oxygenase (decyclizing) activity, heme binding; INVOLVED IN: regulation of meristem growth, heme oxidation, red, far-red light phototransduction, chloroplast-nucleus signaling pathway, phytochromobilin biosynthetic process; LOCATED IN: chloroplast; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Haem oxygenase-like, multi-helical (InterPro:IPR016084), Haem oxygenase-like (InterPro:IPR016053), Haem oxygenase (decyclizing), plant (InterPro:IPR016951); BEST Arabidopsis thaliana protein match is: heme oxygenase 3 (TAIR:AT1G69720.1); Has 616 Blast hits to 616 proteins in 143 species: Archae - 0; Bacteria - 178; Metazoa - 207; Fungi - 2; Plants - 113; Viruses - 0; Other Eukaryotes - 116 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:AT2G26670-MONOMERBioCyc:MetaCyc:AT2G26670-MONOMERBioGrid:2560EC:1.14.14.18
eggNOG:COG5398eggNOG:KOG4480EMBL:AB021857EMBL:AB021858
EMBL:AC003105EMBL:AF132475EMBL:AF132476EMBL:AF327418
EMBL:AF375414EMBL:AY087288EMBL:AY129477EMBL:BT002327
EMBL:CP002685EnsemblPlants:AT2G26670EnsemblPlants:AT2G26670.1entrez:817208
Gene3D:1.20.910.10GeneID:817208Genevisible:O48782GO:GO:0004392
GO:GO:0006788GO:GO:0009507GO:GO:0009813GO:GO:0010019
GO:GO:0010024GO:GO:0010075GO:GO:0010119GO:GO:0015979
GO:GO:0016117GO:GO:0020037GO:GO:0046872GO:GO:0071494
hmmpanther:PTHR35703hmmpanther:PTHR35703:SF2HOGENOM:HOG000265822InParanoid:O48782
InterPro:IPR016053InterPro:IPR016084InterPro:IPR016951iPTMnet:O48782
KEGG:ath:AT2G26670KO:K00510ncoils:CoilOMA:WEPTVDG
PaxDb:O48782Pfam:O48782Pfam:PF01126PhylomeDB:O48782
PIR:T52457PIRSF:PIRSF030219PRIDE:O48782PRO:PR:O48782
ProteinModelPortal:O48782Proteomes:UP000006548RefSeq:NP_001118392.1RefSeq:NP_180235.1
SMR:O48782STRING:3702.AT2G26670.1SUPFAM:SSF48613TAIR:AT2G26670
tair10-symbols:ATHO1tair10-symbols:GUN2tair10-symbols:HO1tair10-symbols:HY1
tair10-symbols:HY6tair10-symbols:TED4UniGene:At.23645UniProt:O48782
Coordinates (TAIR10) chr2:+:11341816..11343394
Molecular Weight (calculated) 32693.00 Da
IEP (calculated) 6.96
GRAVY (calculated) -0.59
Length 282 amino acids
Sequence (TAIR10)
(BLAST)
001: MAYLAPISSS LSIFKNPQLS RFQFSSSSPN PLFLRPRIQI LSMTMNKSPS LVVVAATTAA EKQKKRYPGE SKGFVEEMRF VAMRLHTKDQ AKEGEKETKS
101: IEERPVAKWE PTVEGYLRFL VDSKLVYDTL ELIIQDSNFP TYAEFKNTGL ERAEKLSTDL EWFKEQGYEI PEPTAPGKTY SQYLKELAEK DPQAFICHFY
201: NIYFAHSAGG RMIGRKVAER ILDNKELEFY KWDGELSQLL QNVREKLNKV AEEWTREEKN HCLEETEKSF KYSGEILRLI LS
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)