AT1G27150.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:cytosol 0.985 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Tetratricopeptide repeat (TPR)-like superfamily protein | ||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Tetratricopeptide repeat (TPR)-like superfamily protein; FUNCTIONS IN: binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Tetratricopeptide-like helical (InterPro:IPR011990); BEST Arabidopsis thaliana protein match is: Tetratricopeptide repeat (TPR)-like superfamily protein (TAIR:AT1G27110.1); Has 429 Blast hits to 423 proteins in 137 species: Archae - 5; Bacteria - 191; Metazoa - 78; Fungi - 0; Plants - 66; Viruses - 0; Other Eukaryotes - 89 (source: NCBI BLink). | ||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr1:+:9429177..9432068 | ||||||||||||||||||||||||
| Molecular Weight (calculated) | 53592.00 Da | ||||||||||||||||||||||||
| IEP (calculated) | 5.66 | ||||||||||||||||||||||||
| GRAVY (calculated) | -0.33 | ||||||||||||||||||||||||
| Length | 468 amino acids | ||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MEKTVRCVRW GYEVNTSSDA CIDAINSYFQ QVLSYGRKRK VILEAPLYDK DCVLGSILAA HFLSSSDPSR ANSYVEAAAS NLEQSTPYEK AVYEAVTYLI 101: SEDRDDDLAF EMHTKLLKRF PKDLASLKRA QLLSFYMGQP DPFLGLVQQV LPANQEESYI HGLLAFPLLE LGRMEEAAAA SRKGYEINKE DAWAHHCLCH 201: VLQHECRFKE AVEFMEALAG TWPSCSSFMY THNWWHVALC YLEGGSPMSK VEEIYDHHIW KELEKDDAVP PEVYLNALGL LIRLDVRDAL DGFEDRLKNL 301: AVRLTNQANW YLEWHLDILI VWALAKVGET SRAHELLEGL KFRLSKKNKK KQQVMQKGIQ LGEAVYEYAR GNYEKALELL GSEFNAIGYK IVGASDEQID 401: VFNEMWCQLL LKTGQSSTAK EVIRERIKAR DGIPFMWRLL EKSYSMEGNA EAESSARERA KKLESCYF |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)