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AT3G16190.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
cytosol 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:31186290 (2019): cytosol None
  • PMID:30783145 (2019): extracellular region plant-type cell wall
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Isochorismatase family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Isochorismatase family protein; FUNCTIONS IN: catalytic activity; INVOLVED IN: metabolic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Isochorismatase-like (InterPro:IPR000868); BEST Arabidopsis thaliana protein match is: nicotinamidase 2 (TAIR:AT5G23230.1); Has 6935 Blast hits to 6933 proteins in 1622 species: Archae - 156; Bacteria - 6040; Metazoa - 0; Fungi - 183; Plants - 97; Viruses - 0; Other Eukaryotes - 459 (source: NCBI BLink).
Protein Annotations
eggNOG:COG1335eggNOG:ENOG410IJACEMBL:AB023046EMBL:AY058125
EMBL:AY086380EMBL:AY143919EMBL:CP002686EnsemblPlants:AT3G16190
EnsemblPlants:AT3G16190.1entrez:820865Gene3D:3.40.50.850GeneID:820865
Genevisible:Q93Z51GO:GO:0003824Gramene:AT3G16190.1hmmpanther:PTHR11080
HOGENOM:HOG000078668InParanoid:Q93Z51IntAct:Q93Z51InterPro:IPR000868
KEGG:ath:AT3G16190OMA:TPNCIRTPaxDb:Q93Z51Pfam:PF00857
Pfam:Q93Z51PhylomeDB:Q93Z51PRIDE:Q93Z51PRO:PR:Q93Z51
ProteinModelPortal:Q93Z51Proteomes:UP000006548RefSeq:NP_566539.1SMR:Q93Z51
STRING:3702.AT3G16190.1SUPFAM:SSF52499TAIR:AT3G16190UniGene:At.21500
UniProt:Q93Z51
Coordinates (TAIR10) chr3:-:5489883..5491195
Molecular Weight (calculated) 21859.30 Da
IEP (calculated) 6.02
GRAVY (calculated) -0.06
Length 196 amino acids
Sequence (TAIR10)
(BLAST)
001: MAERWRNTAL LVIDMQNDFI EEGAVTQVKG GKSIVPNVIR VVELARQRGI LVIWVVREHD RQGRDVELFR RHNYSSEKVG PVIKGTVGAE LVDGLMINEE
101: DDYKIVKTRF SAFFSTNLHS FLQTSGVTKL VIAGVQTPNC IRQTVFDAVA LDYPNVTVIT DATAAATPEI HTANILDMKN IGVKTPTLHE WSEELA
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)