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AT1G06200.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
mitochondrion 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Peptidase S24/S26A/S26B/S26C family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Peptidase S24/S26A/S26B/S26C family protein; CONTAINS InterPro DOMAIN/s: Peptidase S24/S26A/S26B/S26C, beta-ribbon domain (InterPro:IPR011056), Peptidase S24/S26A/S26B/S26C (InterPro:IPR015927); BEST Arabidopsis thaliana protein match is: Peptidase S24/S26A/S26B/S26C family protein (TAIR:AT2G31140.1); Has 259 Blast hits to 259 proteins in 81 species: Archae - 0; Bacteria - 8; Metazoa - 68; Fungi - 34; Plants - 130; Viruses - 0; Other Eukaryotes - 19 (source: NCBI BLink).
Protein Annotations
eggNOG:COG0681eggNOG:KOG1568EMBL:AY062792EMBL:AY081581
EMBL:CP002684EnsemblPlants:AT1G06200EnsemblPlants:AT1G06200.1entrez:837129
Gene3D:2.10.109.10GeneID:837129GO:GO:0008236GO:GO:0016020
Gramene:AT1G06200.1hmmpanther:PTHR12383hmmpanther:PTHR12383:SF5InterPro:IPR000223
InterPro:IPR015927InterPro:IPR028360KEGG:ath:AT1G06200OMA:VRYMAHK
PANTHER:PTHR12383PhylomeDB:Q8W476Proteomes:UP000006548RefSeq:NP_172110.1
STRING:3702.AT1G06200.1SUPFAM:SSF51306TAIR:AT1G06200UniGene:At.27230
UniProt:Q8W476
Coordinates (TAIR10) chr1:-:1894604..1896852
Molecular Weight (calculated) 23250.80 Da
IEP (calculated) 5.39
GRAVY (calculated) -0.34
Length 206 amino acids
Sequence (TAIR10)
(BLAST)
001: MASITNYVRY MAHKLEYSLT LSLKKHTREK LSDRELFGVV MKNLFYGRIS YLHSDKGKEM APTMGTNEST LLVRKLPVVD TRYIFVGDAV VLKDPNETNK
101: YIVRRLAALE GSEMVSSDEK DEPFVLEKDQ CWVVAENQEM KSKEAYDSRT FGPISMADIV GRAIYCLRTA VDHGPVSNSE FAMDEDSPIL AVELDVDELA
201: KGHKAS
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)