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AT1G55270.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
mitochondrion 0.553
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Galactose oxidase/kelch repeat superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Galactose oxidase/kelch repeat superfamily protein; CONTAINS InterPro DOMAIN/s: F-box domain, cyclin-like (InterPro:IPR001810), Galactose oxidase/kelch, beta-propeller (InterPro:IPR011043), Kelch repeat type 1 (InterPro:IPR006652), Kelch related (InterPro:IPR013089), Kelch-type beta propeller (InterPro:IPR015915); BEST Arabidopsis thaliana protein match is: Galactose oxidase/kelch repeat superfamily protein (TAIR:AT1G67480.2); Has 9614 Blast hits to 5501 proteins in 487 species: Archae - 10; Bacteria - 408; Metazoa - 7370; Fungi - 10; Plants - 1320; Viruses - 170; Other Eukaryotes - 326 (source: NCBI BLink).
Protein Annotations
BioGrid:27197eggNOG:ENOG4110X8DEMBL:AC027034EMBL:AF370138EMBL:AY051069EnsemblPlants:AT1G55270EnsemblPlants:AT1G55270.1
entrez:841972Gene3D:2.130.10.80Genevisible:Q93W93hmmpanther:PTHR24412hmmpanther:PTHR24412:SF234InterPro:IPR006652InterPro:IPR015916
Pfam:PF00646Pfam:PF01344Pfam:Q93W93RefSeq:NP_564684.1SUPFAM:0052715SUPFAM:SSF81383UniProt:Q93W93
Coordinates (TAIR10) chr1:-:20618333..20619925
Molecular Weight (calculated) 49212.50 Da
IEP (calculated) 9.97
GRAVY (calculated) -0.37
Length 434 amino acids
Sequence (TAIR10)
(BLAST)
001: MDLSSQRQSP NGSRGFRLQA PLVDSVSCYC RVDSGLKTVV EARKFVPGSK LCIQPDINPN AHRRKNSKRE RTRIQPPLLP GLPDDLAVAC LIRVPRAEHR
101: KLRLVCKRWY RLASGNFFYS QRKLLGMSEE WVYVFKRDRD GKISWNTFDP ISQLWQPLPP VPREYSEAVG FGCAVLSGCH LYLFGGKDPL RGSMRRVIFY
201: NARTNKWHRA PDMLRKRHFF GCCVINNCLY VAGGECEGIQ RTLRSAEVYD PNKNRWSFIA DMSTAMVPLI GVVYDKKWFL KGLGSHQLVM SEAYDPEVNS
301: WSPVSDGMVA GWRNPCTSLN GRLYGLDCRD GCKLRVFDES TDSWNKFMDS KAHLGNSKSL EAAALVPLHN KLCIIRNNMS MSLVDVSNPD KNNPRLWENI
401: AVKGQSKSIL SNIWSSIAGR ALKSHIVHCQ VLQA
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)