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AT4G31440.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 0.989
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding :
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G24530.1); Has 210 Blast hits to 209 proteins in 55 species: Archae - 0; Bacteria - 72; Metazoa - 2; Fungi - 6; Plants - 128; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410IKYHeggNOG:ENOG4112A4NEMBL:AL080283EMBL:AL161579
EMBL:CP002687EMBL:DQ446889EnsemblPlants:AT4G31440EnsemblPlants:AT4G31440.1
entrez:829271GeneID:829271GO:GO:0070461Gramene:AT4G31440.1
hmmpanther:PTHR21277hmmpanther:PTHR21277:SF8InterPro:IPR024738KEGG:ath:AT4G31440
OMA:QNTHIDVPfam:PF12767PhylomeDB:Q9SV25PIR:T10674
Proteomes:UP000006548RefSeq:NP_194872.1TAIR:AT4G31440UniGene:At.54564
UniProt:Q9SV25
Coordinates (TAIR10) chr4:+:15253731..15254870
Molecular Weight (calculated) 41804.00 Da
IEP (calculated) 8.89
GRAVY (calculated) -0.45
Length 379 amino acids
Sequence (TAIR10)
(BLAST)
001: MQRLQDPRID LAELKVHIVK KVGVERSTRY FYYLGRFLSQ KLTKSEFDKS CFRLLGRENL SLHNKLIRSI LRNASLAKSP PSVHQSGHPG KSLVLGKEDG
101: PEESRSLNPD HIRNDLALSN GVLAKVRPGT CDDRTIRDKP CPLGSNGKVL GPFAYSRPGR YPDERDSAFL CPAEQKAVSG KDQVAAPISR DDEAQVRILS
201: TPPVMAPLGI PFCSASVGGD RRTVPVSTSA AAISCYDSGG LSDTEMLRKR MENIAVTQGL GGVSAECSIV LNNMLDLYLK KLMKSCVDLA GARSMNGTPG
301: KHSLEKQQSR DELVNGVRTN NSFHIQTSNQ PSDITREQHS VSLLDFRVAM ELNPHQLGED WPLLRERISI SLFEEREGV
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)