suba logo
AT1G52540.1
Subcellular Consensus
(Prediction and Experimental)

min: heatmap :max

.
SUBAcon:
plasma membrane 1.000
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Protein kinase superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Protein kinase superfamily protein; FUNCTIONS IN: protein tyrosine kinase activity, protein kinase activity, kinase activity, ATP binding; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: plasma membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Protein kinase, catalytic domain (InterPro:IPR000719), Tyrosine-protein kinase, active site (InterPro:IPR008266), Serine-threonine/tyrosine-protein kinase (InterPro:IPR001245), Protein kinase-like domain (InterPro:IPR011009); BEST Arabidopsis thaliana protein match is: Protein kinase superfamily protein (TAIR:AT3G15890.1); Has 98543 Blast hits to 97377 proteins in 3831 species: Archae - 68; Bacteria - 11032; Metazoa - 36701; Fungi - 6941; Plants - 30133; Viruses - 293; Other Eukaryotes - 13375 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:AT1G52540-MONOMEReggNOG:COG0515eggNOG:KOG1187EMBL:AY086096EMBL:CP002684EnsemblPlants:AT1G52540EnsemblPlants:AT1G52540.1
entrez:841685GeneID:841685GO:GO:0004672GO:GO:0005524GO:GO:0005886GO:GO:0009506Gramene:AT1G52540.1
hmmpanther:PTHR27001hmmpanther:PTHR27001:SF88HOGENOM:HOG000116550InterPro:IPR000719InterPro:IPR001245InterPro:IPR008266InterPro:IPR011009
InterPro:IPR017441KEGG:ath:AT1G52540OMA:PEQRPIMPfam:PF07714Pfscan:PS50011PhylomeDB:Q8LDB7PROSITE:PS00107
PROSITE:PS00109PROSITE:PS50011Proteomes:UP000006548RefSeq:NP_564609.3scanprosite:PS00107scanprosite:PS00109SMR:Q8LDB7
STRING:3702.AT1G52540.1SUPFAM:SSF56112SwissPalm:Q8LDB7TAIR:AT1G52540UniGene:At.23569UniProt:Q8LDB7
Coordinates (TAIR10) chr1:-:19570298..19571884
Molecular Weight (calculated) 39870.50 Da
IEP (calculated) 5.88
GRAVY (calculated) -0.40
Length 350 amino acids
Sequence (TAIR10)
(BLAST)
001: MQIFSCFCCG KGFDRQKKVK TEPSWRIFSL KELHAATNSF NYDNKLGEGR FGSVYWGQLW DGSQIAVKRL KAWSSREEID FAVEVEILAR IRHKNLLSVR
101: GYCAEGQERL IVYDYMPNLS LVSHLHGQHS SESLLDWTRR MNIAVSSAQA IAYLHHFATP RIVHGDVRAS NVLLDSEFEA RVTDFGYDKL MPDDGANKST
201: KGNNIGYLSP ECIESGKESD MGDVYSFGVL LLELVTGKRP TERVNLTTKR GITEWVLPLV YERKFGEIVD QRLNGKYVEE ELKRIVLVGL MCAQRESEKR
301: PTMSEVVEML MIESKEKMAQ LEANPLFNGN NDGEVIDESS EIISEVRDHQ
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)