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AT1G52200.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
plasma membrane 1.000
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : PLAC8 family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
PLAC8 family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: response to oxidative stress; LOCATED IN: plasma membrane; EXPRESSED IN: 10 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function Cys-rich (InterPro:IPR006461); BEST Arabidopsis thaliana protein match is: PLAC8 family protein (TAIR:AT3G18450.1); Has 632 Blast hits to 631 proteins in 72 species: Archae - 0; Bacteria - 0; Metazoa - 38; Fungi - 75; Plants - 516; Viruses - 0; Other Eukaryotes - 3 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410IX91eggNOG:ENOG410YMMCEMBL:AC022354EMBL:AK227386EMBL:AY085651EMBL:BT004773EMBL:CP002684
EnsemblPlants:AT1G52200EnsemblPlants:AT1G52200.1entrez:841650GeneID:841650Genevisible:Q9M815GO:GO:0005886GO:GO:0006979
GO:GO:0016021Gramene:AT1G52200.1hmmpanther:PTHR15907hmmpanther:PTHR15907:SF46HOGENOM:HOG000237749InParanoid:Q9M815InterPro:IPR006461
iPTMnet:Q9M815KEGG:ath:AT1G52200OMA:LMMPALCPaxDb:Q9M815Pfam:PF04749Pfam:Q9M815PhylomeDB:Q9M815
PIR:A96562PRIDE:Q9M815PRO:PR:Q9M815Proteomes:UP000006548RefSeq:NP_564602.1STRING:3702.AT1G52200.1TAIR:AT1G52200
TIGRfam:TIGR01571TIGRFAMs:TIGR01571TMHMM:TMhelixUniGene:At.37647UniProt:Q9M815
Coordinates (TAIR10) chr1:-:19442271..19443407
Molecular Weight (calculated) 21180.30 Da
IEP (calculated) 5.76
GRAVY (calculated) -0.37
Length 190 amino acids
Sequence (TAIR10)
(BLAST)
001: MGRVTTPSEE DSNNGLPVQQ PGTPNQRTRV PVSQFAPPNY QQANVNLSVG RPWSTGLFDC QADQANAVLT TIVPCVTFGQ IAEVMDEGEM TCPLGTFMYL
101: LMMPALCSHW VMGSKYREKM RRKFNLVEAP YSDCASHVLC PCCSLCQEYR ELKIRNLDPS LGWNGILAQG QGQYEREAPS FAPTNQYMSK
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)