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AT5G51810.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

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SUBAcon:
cytosol 0.998
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : gibberellin 20 oxidase 2
Curator
Summary (TAIR10)
Encodes gibberellin 20-oxidase. Involved in gibberellin biosynthesis. Up-regulated by far red light in elongating petioles. Not regulated by a circadian clock.
Computational
Description (TAIR10)
gibberellin 20 oxidase 2 (GA20OX2); CONTAINS InterPro DOMAIN/s: Isopenicillin N synthase (InterPro:IPR002283), Oxoglutarate/iron-dependent oxygenase (InterPro:IPR005123); BEST Arabidopsis thaliana protein match is: 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (TAIR:AT4G25420.1); Has 8534 Blast hits to 8499 proteins in 990 species: Archae - 0; Bacteria - 1114; Metazoa - 120; Fungi - 1000; Plants - 4903; Viruses - 0; Other Eukaryotes - 1397 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:AT5G51810-MONOMERBioCyc:MetaCyc:AT5G51810-MONOMERBRENDA:1.14.11.12EC:1.14.11.-
eggNOG:COG3491eggNOG:KOG0143EMBL:AB010074EMBL:CP002688
EMBL:X83380EnsemblPlants:AT5G51810EnsemblPlants:AT5G51810.1entrez:835256
Gene3D:2.60.120.330GeneID:835256Genevisible:Q39111GO:GO:0005506
GO:GO:0009639GO:GO:0009686GO:GO:0009739GO:GO:0009826
GO:GO:0009908GO:GO:0045544GO:GO:0080167Gramene:AT5G51810.1
gramene_pathway:1.14.11.-gramene_pathway:1.14.11.12gramene_pathway:PWY-5035gramene_pathway:PWY-5036
gramene_pathway:PWY-5070hmmpanther:PTHR10209hmmpanther:PTHR10209:SF140HOGENOM:HOG000276735
InParanoid:Q39111InterPro:IPR002283InterPro:IPR005123InterPro:IPR026992
InterPro:IPR027443KEGG:ath:AT5G51810KO:K05282OMA:IDIPELN
PaxDb:Q39111Pfam:PF03171Pfam:PF14226Pfam:Q39111
Pfscan:PS51471PhylomeDB:Q39111PRIDE:Q39111PRINTS:PR00682
PRO:PR:Q39111PROSITE:PS51471ProteinModelPortal:Q39111Proteomes:UP000006548
RefSeq:NP_199994.1SMR:Q39111STRING:3702.AT5G51810.1SUPFAM:SSF51197
TAIR:AT5G51810tair10-symbols:AT2353tair10-symbols:ATGA20OX2tair10-symbols:GA20OX2
UniGene:At.28053UniPathway:UPA00390UniProt:Q39111
Coordinates (TAIR10) chr5:-:21055389..21056746
Molecular Weight (calculated) 42938.90 Da
IEP (calculated) 5.81
GRAVY (calculated) -0.41
Length 378 amino acids
Sequence (TAIR10)
(BLAST)
001: MAILCTTTSP AEKEHEPKQD LEKDQTSPLI FNPSLLNLQS QIPNQFIWPD EEKPSIDIPE LNVPFIDLSS QDSTLEAPRV IAEACTKHGF FLVVNHGVSE
101: SLIADAHRLM ESFFDMPLAG KQKAQRKPGE SCGYASSFTG RFSTKLPWKE TLSFQFSNDN SGSRTVQDYF SDTLGQEFEQ FGKVYQDYCE AMSSLSLKIM
201: ELLGLSLGVN RDYFRGFFEE NDSIMRLNHY PPCQTPDLTL GTGPHCDPSS LTILHQDHVN GLQVFVDNQW QSIRPNPKAF VVNIGDTFMA LSNGIFKSCL
301: HRAVVNRESA RKSMAFFLCP KKDKVVKPPS DILEKMKTRK YPDFTWSMFL EFTQKHYRAD VNTLDSFSNW VITNNNPI
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)