AT5G55250.1
Subcellular Consensus
(Prediction and Experimental) min: :max .
SUBAcon:cytosol 0.966 What is SUBAcon? |
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Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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Description (TAIR10) | protein_coding : IAA carboxylmethyltransferase 1 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Curator Summary (TAIR10) |
Encodes an enzyme which specifically converts IAA to its methyl ester form MelIAA. This gene belongs to the family of carboxyl methyltransferases whose members catalyze the transfer of the methyl group from S-adenosyl-L-methionine to carboxylic acid-containing substrates to form small molecule methyl esters. Expression of TCP genes is downregulated in mutant iamt1-D. | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Computational Description (TAIR10) |
IAA carboxylmethyltransferase 1 (IAMT1); CONTAINS InterPro DOMAIN/s: SAM dependent carboxyl methyltransferase (InterPro:IPR005299); BEST Arabidopsis thaliana protein match is: gibberellic acid methyltransferase 2 (TAIR:AT5G56300.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Protein Annotations |
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Coordinates (TAIR10) | chr5:-:22407589..22410854 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Molecular Weight (calculated) | 42056.70 Da | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
IEP (calculated) | 6.37 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
GRAVY (calculated) | -0.10 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Length | 386 amino acids | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sequence (TAIR10) (BLAST) |
001: MGSKGDNVAV CNMKLERLLS MKGGKGQDSY ANNSQAQAMH ARSMLHLLEE TLENVHLNSS ASPPPFTAVD LGCSSGANTV HIIDFIVKHI SKRFDAAGID 101: PPEFTAFFSD LPSNDFNTLF QLLPPLVSNT CMEECLAADG NRSYFVAGVP GSFYRRLFPA RTIDFFHSAF SLHWLSQVPE SVTDRRSAAY NRGRVFIHGA 201: GEKTTTAYKR QFQADLAEFL RARAAEVKRG GAMFLVCLGR TSVDPTDQGG AGLLFGTHFQ DAWDDLVREG LVAAEKRDGF NIPVYAPSLQ DFKEVVDANG 301: SFAIDKLVVY KGGSPLVVNE PDDASEVGRA FASSCRSVAG VLVEAHIGEE LSNKLFSRVE SRATSHAKDV LVNLQFFHIV ASLSFT |
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See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)