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AT5G07200.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

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SUBAcon:
cytosol 0.998
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : gibberellin 20-oxidase 3
Curator
Summary (TAIR10)
encodes a gibberellin 20-oxidase.
Computational
Description (TAIR10)
gibberellin 20-oxidase 3 (GA20OX3); CONTAINS InterPro DOMAIN/s: Isopenicillin N synthase (InterPro:IPR002283), Oxoglutarate/iron-dependent oxygenase (InterPro:IPR005123); BEST Arabidopsis thaliana protein match is: gibberellin 20-oxidase 4 (TAIR:AT1G60980.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Protein Annotations
BioCyc:MetaCyc:AT5G07200-MONOMEREC:1.14.11.-eggNOG:COG3491eggNOG:KOG0143
EMBL:AL163652EMBL:BT004311EMBL:BT005615EMBL:CP002688
EMBL:X83381EnsemblPlants:AT5G07200EnsemblPlants:AT5G07200.1entrez:830611
Gene3D:2.60.120.330GeneID:830611Genevisible:Q39112GO:GO:0005506
GO:GO:0009686GO:GO:0045544Gramene:AT5G07200.1gramene_pathway:1.14.11.-
gramene_pathway:1.14.11.12gramene_pathway:PWY-5035gramene_pathway:PWY-5036gramene_pathway:PWY-5070
hmmpanther:PTHR10209hmmpanther:PTHR10209:SF140HOGENOM:HOG000276735InParanoid:Q39112
InterPro:IPR002283InterPro:IPR005123InterPro:IPR026992InterPro:IPR027443
KEGG:ath:AT5G07200KO:K05282OMA:ERKTFAFPaxDb:Q39112
Pfam:PF03171Pfam:PF14226Pfam:Q39112Pfscan:PS51471
PhylomeDB:Q39112PIR:T48491PRIDE:Q39112PRINTS:PR00682
PRO:PR:Q39112PROSITE:PS51471ProteinModelPortal:Q39112Proteomes:UP000006548
RefSeq:NP_196337.1SMR:Q39112STRING:3702.AT5G07200.1SUPFAM:SSF51197
TAIR:AT5G07200tair10-symbols:ATGA20OX3tair10-symbols:GA20OX3tair10-symbols:YAP169
UniGene:At.5050UniPathway:UPA00390UniProt:Q39112
Coordinates (TAIR10) chr5:-:2243835..2245157
Molecular Weight (calculated) 43439.60 Da
IEP (calculated) 7.37
GRAVY (calculated) -0.46
Length 380 amino acids
Sequence (TAIR10)
(BLAST)
001: MATECIATVP QIFSENKTKE DSSIFDAKLL NQHSHHIPQQ FVWPDHEKPS TDVQPLQVPL IDLAGFLSGD SCLASEATRL VSKAATKHGF FLITNHGVDE
101: SLLSRAYLHM DSFFKAPACE KQKAQRKWGE SSGYASSFVG RFSSKLPWKE TLSFKFSPEE KIHSQTVKDF VSKKMGDGYE DFGKVYQEYA EAMNTLSLKI
201: MELLGMSLGV ERRYFKEFFE DSDSIFRLNY YPQCKQPELA LGTGPHCDPT SLTILHQDQV GGLQVFVDNK WQSIPPNPHA FVVNIGDTFM ALTNGRYKSC
301: LHRAVVNSER ERKTFAFFLC PKGEKVVKPP EELVNGVKSG ERKYPDFTWS MFLEFTQKHY RADMNTLDEF SIWLKNRRSF
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)