AT5G07190.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:extracellular 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : seed gene 3 | ||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
Gene is expressed preferentially in the embryo and encodes a unique protein of unknown function. | ||||||||||||||||||||||||||||||||
| Computational Description (TAIR10) |
seed gene 3 (ATS3); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: embryo development ending in seed dormancy; LOCATED IN: anchored to membrane, membrane; EXPRESSED IN: embryo, leaf whorl, carpel, seed, leaf; EXPRESSED DURING: petal differentiation and expansion stage, E expanded cotyledon stage; CONTAINS InterPro DOMAIN/s: Lipase/lipooxygenase, PLAT/LH2 (InterPro:IPR008976), Embryo-specific 3 (InterPro:IPR010417); BEST Arabidopsis thaliana protein match is: Embryo-specific protein 3, (ATS3) (TAIR:AT5G62210.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr5:+:2237610..2238488 | ||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 23084.40 Da | ||||||||||||||||||||||||||||||||
| IEP (calculated) | 6.74 | ||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.11 | ||||||||||||||||||||||||||||||||
| Length | 213 amino acids | ||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MTFPSLSVSF LFFAFIFVTH AFDLSIIQMQ QGTCPYTVVV MTSCLSPEST RDQISIVFGD ADGNKVYAPK LGGLVRGPGG LGKCSTNTFQ VRGQCLNDPI 101: CSLYINRNGP DGWVPESIEI YSEGSKSVKF DFSKSVPQLN TWYGHNNCNT TGRPSSPDLP PPHFPPEFPP ETPTTPPPPP PRPSAASRLG NGESVFLAFA 201: IATAIAAMVR WSY |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)