suba logo
AT5G44360.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

.
SUBAcon:
extracellular 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:30783145 (2019): extracellular region plant-type cell wall
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : FAD-binding Berberine family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
FAD-binding Berberine family protein; FUNCTIONS IN: electron carrier activity, oxidoreductase activity, FAD binding, catalytic activity; INVOLVED IN: oxidation reduction; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: FAD-binding, type 2 (InterPro:IPR016166), Oxygen oxidoreductase covalent FAD-binding site (InterPro:IPR006093), Berberine/berberine-like (InterPro:IPR012951), FAD linked oxidase, N-terminal (InterPro:IPR006094); BEST Arabidopsis thaliana protein match is: FAD-binding Berberine family protein (TAIR:AT4G20860.1); Has 4918 Blast hits to 4788 proteins in 768 species: Archae - 52; Bacteria - 2097; Metazoa - 4; Fungi - 1714; Plants - 788; Viruses - 0; Other Eukaryotes - 263 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:AT5G44360-MONOMEReggNOG:COG0277eggNOG:ENOG410IE3MEMBL:AB011475
EMBL:CP002688EnsemblPlants:AT5G44360EnsemblPlants:AT5G44360.1entrez:834462
Gene3D:3.30.43.10Gene3D:3.30.465.10GeneID:834462GO:GO:0016614
GO:GO:0050660Gramene:AT5G44360.1hmmpanther:PTHR32448hmmpanther:PTHR32448:SF21
HOGENOM:HOG000238933InterPro:IPR006093InterPro:IPR006094InterPro:IPR012951
InterPro:IPR016166InterPro:IPR016167InterPro:IPR016169KEGG:ath:AT5G44360
OMA:HEVESPIPfam:PF01565Pfam:PF08031Pfscan:PS51387
PhylomeDB:Q9FKV2PROSITE:PS00862PROSITE:PS51387Proteomes:UP000006548
RefSeq:NP_199249.1scanprosite:PS00862SMR:Q9FKV2STRING:3702.AT5G44360.1
SUPFAM:SSF56176TAIR:AT5G44360UniGene:At.28010UniProt:Q9FKV2
Coordinates (TAIR10) chr5:-:17872100..17873698
Molecular Weight (calculated) 60502.20 Da
IEP (calculated) 9.78
GRAVY (calculated) -0.18
Length 532 amino acids
Sequence (TAIR10)
(BLAST)
001: MRTLEAFALS LFLVFLVKWV NSDSSSSPSK DQFLSCMSTH SDSSFINPKS FIHKPDSRVY TDFSQSLISQ NYRFLTLNFT SQKPILIVTP RTDTEIQRSL
101: LCSRKLGVKV RTKSGGHDYE GLSYLSLHSP FIILDLVNVR SIEINLADET AWVGAGATIG ELYYKIAKSS KIHGFPAGTC PSVGVGGHFS GGGFGAMMRK
201: HGLAADNVVD ARFVDANGRI YNSRREMGED LFWAIRGGGA ASFGVVLSWK VKLVRVPEKV TCFRRNLPLT QNMTKIVHRW QQIAAELDDN LFIRVIVSIS
301: GGSVQTTFQA NYLGGIDKLI PLMNQKFPEL GLTFQDCSEM TWIDSIMYFN WKKGQPLETL LDRGQRYNDL YFKAKSDFVK NPIPEIGLEG IWTRFHEVES
401: PIMIMEPLGG KMYEIGETET PFPHRRGNLY NIQYMVKWRL KDIGVMEKHV TWMRLLYRYM RVYVSASPRG AYLNYRDLDL GMNRGVNTSF EDAKLWGFRY
501: FGSNFKRLAI VKGKIDPTNF FRNEQSVPPL IV
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)