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AT5G49990.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
plasma membrane 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:31541795 (2020): plasma membrane
  • PMID:28865150 (2017): extracellular region plant-type cell wall
  • PMID:22318864 (2012): plasma membrane
  • PMID:21533090 (2011): extracellular region plant-type cell wall
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : Xanthine/uracil permease family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Xanthine/uracil permease family protein; FUNCTIONS IN: transmembrane transporter activity; INVOLVED IN: transport, transmembrane transport; LOCATED IN: membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Xanthine/uracil/vitamin C permease (InterPro:IPR006043); BEST Arabidopsis thaliana protein match is: Xanthine/uracil permease family protein (TAIR:AT5G62890.3); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:GQT-471-MONOMERBioGrid:20309eggNOG:COG2233eggNOG:KOG1292
EMBL:AB024032EMBL:AB026650EMBL:AK229752EMBL:AY093137
EMBL:BT008887EMBL:CP002688EnsemblPlants:AT5G49990EnsemblPlants:AT5G49990.1
entrez:835063GeneID:835063Genevisible:Q8RWE9GO:GO:0005215
GO:GO:0009506GO:GO:0016021GO:GO:0055085Gramene:AT5G49990.1
hmmpanther:PTHR11119hmmpanther:PTHR11119:SF48HOGENOM:HOG000038202InParanoid:Q8RWE9
IntAct:Q8RWE9InterPro:IPR006043KEGG:ath:AT5G49990OMA:FHVAAII
PANTHER:PTHR11119PaxDb:Q8RWE9Pfam:PF00860Pfam:Q8RWE9
PhylomeDB:Q8RWE9PRIDE:Q8RWE9PRO:PR:Q8RWE9ProteinModelPortal:Q8RWE9
Proteomes:UP000006548Reactome:R-ATH-196836RefSeq:NP_199810.2SMR:Q8RWE9
STRING:3702.AT5G49990.1TAIR:AT5G49990TMHMM:TMhelixUniGene:At.7929
UniProt:Q8RWE9
Coordinates (TAIR10) chr5:-:20337864..20341187
Molecular Weight (calculated) 57324.60 Da
IEP (calculated) 9.90
GRAVY (calculated) 0.50
Length 528 amino acids
Sequence (TAIR10)
(BLAST)
001: MSAPKSGGDP LPHPPKEQLP DISYCITSPP PWPEAVLLGF QHYLVMLGTT VLIPSALVPQ MGGRNEEKAK LIQTILFVAG LNTLLQTVFG TRLPAVIGAS
101: YTFVPVTISI MLSGRFNDVA DPVERFKRII RATQGALIVA STLQIILGFS GLWRNVVRFL SPLSAAPLVG LVGYGLYELG FPGVAKCIEI GLPGLIILIL
201: ISQYMPHVIK GGKHVFARFA VIFSVAIVWL YAFFLTLGGA YNGVGTDTQR SCRTDRAGLI SAAPWIRVPW PFQWGAPLFD AGEAFAMMMA SFVALVESTG
301: AFIAVSRYAS ATMPPPSVIS RGVGWQGVAI LISGLFGTGI GSSVSVENAG LLALTKIGSR RVVQISAGFM IFFSILGKFG AVFASIPSPI IAALYCLFFA
401: YVGAGGLSLL QFCNLNSFRT LFILGFSIFL GLSIPQYFNE HTAIKGYGPV HTGARWFNDM VNVPFSSKAF VGGCVAYLLD TTLHKKDGSI RKDRGKHWWD
501: RFWTFKNDPR TEEFYALPFN LNKYFPSV
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)